1 / 58

Easy installation Examples in this presentation from windows and unix installations.

Easy installation Examples in this presentation from windows and unix installations. <programe name> Options or Auto mode In windows a self extracting file, after installation a shortcut is created:. Input sequence source Local file Local Database web

allenw
Télécharger la présentation

Easy installation Examples in this presentation from windows and unix installations.

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript

  1. Easy installation • Examples in this presentation from windows and unix installations. • <programe name> • Options or Auto mode • In windows a self extracting file, after installation a shortcut is created:

  2. Input sequence source • Local file • Local Database • web • Sequence input as database:sequence_name • showdb command: displays local databases

  3. emboss.ini

  4. FLAVODOXIN B Flav_azoch: Azotobacter chroococcum mcd 1 FLAVODOXIN 2 Flav_azovi: Azotobacter vinelandii

  5. FLAVONOL SYNTHASE Flav_soltu: Solanum tuberosum (Potato) FLAVODOXIN Flav_rhoca: Rhodopseudomonas capsulata

  6. Others • geecee • fuzzpro • garnier • plotorf • Restrict • Helixturnhelix

  7. http://emboss.sourceforge.net/

  8. EMBOSS interfaceshttp://emboss.sourceforge.net/interfaces/ • Command line: Windows, Cygwin • Java: • Jemboss (needs java web start) • PERL and other scripts: • Bio::Emboss Module • BioPerl EMBOSS only a part • BioPython EMBOSS only a part • Web: • EMBOSSGUI (needs Apache or other webserver) • Pise • W2H • wEMBOSS • Other GUIs: • Staden • Kaptain (KDE2)

More Related