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A. B. C. D. FAMA. OSM2. STKR. HP. 3.0. 12. 200. 5.0. 300. 30. 2.5. 5.0. 2.5. 10. 4.0. 250. 25. 150. 2.0. 4.0. 2.0. 8. RT-qPCR (FC). RT-qPCR (FC). RT-qPCR (FC). RT-qPCR (FC). 200. 20. 3.0. RNA-seq (FPKM). RNA-seq (FPKM). RNA-seq (FPKM). RNA-seq (FPKM). 1.5. 3.0.

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  1. A B C D FAMA OSM2 STKR HP 3.0 12 200 5.0 300 30 2.5 5.0 2.5 10 4.0 250 25 150 2.0 4.0 2.0 8 RT-qPCR (FC) RT-qPCR (FC) RT-qPCR (FC) RT-qPCR (FC) 200 20 3.0 RNA-seq (FPKM) RNA-seq (FPKM) RNA-seq (FPKM) RNA-seq (FPKM) 1.5 3.0 1.5 100 6 150 15 2.0 1.0 2.0 1.0 4 100 10 50 1.0 0.5 1.0 2 0.5 50 5 0 0.0 0 0.0 0 0.0 0 0 C T39 C+P.v. C T39 C+P.v. T39+P.v. C T39 C+P.v. T39+P.v. T39+P.v. C T39 C+P.v. T39+P.v. E F G H WRKY-C2 WRKY1 CHS3 ARF 2.0 6.0 100 3.0 40 15 1.5 5.0 1.5 2.5 1.5 75 30 4.0 RT-qPCR (FC) RT-qPCR (FC) RT-qPCR (FC) RT-qPCR (FC) 2.0 1.0 10 RNA-seq (FPKM) RNA-seq (FPKM) RNA-seq (FPKM) RNA-seq (FPKM) 1.0 1.0 3.0 50 1.5 20 2.0 1.0 5 0.5 0.5 0.5 25 10 1.0 0.5 0 0.0 0 0.0 0 0.0 0.0 0.0 C T39 C+P.v. T39+P.v. C T39 C+P.v. T39+P.v. C T39 C+P.v. T39+P.v. C T39 C+P.v. T39+P.v. I J K L COL MAPK PP2C PPO 8.0 60 7.0 20 20 2.0 1.0 10 6.0 50 6.0 0.8 15 1.5 8 15 5.0 40 RT-qPCR (FC) RT-qPCR (FC) RT-qPCR (FC) RT-qPCR (FC) RNA-seq (FPKM) RNA-seq (FPKM) RNA-seq (FPKM) RNA-seq (FPKM) 4.0 0.6 6 4.0 30 10 1.0 10 3.0 0.4 4 20 2.0 2.0 5 0.5 5 0.2 2 10 1.0 0 0.0 0 0.0 0 0.0 0 0.0 C T39 C+P.v. T39+P.v. C T39 C+P.v. T39+P.v. C T39 C+P.v. T39+P.v. C T39 C+P.v. T39+P.v. M N O P CAB Chit3 OSM1 AP2 1.2 500 5.0 700 10 2500 20 4.0 600 1.0 400 4.0 8 2000 500 15 0.8 3.0 RT-qPCR (FC) RT-qPCR (FC) RT-qPCR (FC) RT-qPCR (FC) 300 3.0 6 400 RNA-seq (FPKM) RNA-seq (FPKM) RNA-seq (FPKM) RNA-seq (FPKM) 1500 0.6 10 2.0 300 200 2.0 4 1000 0.4 200 5 1.0 100 1.0 2 500 0.2 100 0 0 0.0 0 0.0 0.0 0 0 C T39 C+P.v. T39+P.v. C T39 C+P.v. T39+P.v. C T39 C+P.v. T39+P.v. C T39 C+P.v. T39+P.v. Q R S T INV1 RLK UspA ABC-C 14 1.4 4.0 100 12 100 12 1.2 80 8.0 10 80 3.0 10 1.0 75 60 6.0 8 RT-qPCR (FC) RT-qPCR (FC) RT-qPCR (FC) RT-qPCR (FC) 60 8 RNA-seq (FPKM) RNA-seq (FPKM) RNA-seq (FPKM) 0.8 2.0 6 50 0.6 6 40 4.0 40 4 0.4 4 1.0 25 2.0 20 20 2 2 0.2 0 0 0 0.0 0 0.0 0 0.0 C T39 C+P.v. T39+P.v. C T39 C+P.v. T39+P.v. C T39 C+P.v. T39+P.v. C T39 C+P.v. T39+P.v. U V W X SS ERF LK WRKY-C10 20 100 2.0 5.0 3.0 14 125 12 2.5 4.0 75 100 15 75 1.5 10 2.0 RT-qPCR (FC) RT-qPCR (FC) RT-qPCR (FC) RT-qPCR (FC) 3.0 75 RNA-seq (FPKM) RNA-seq (FPKM) 8 RNA-seq (FPKM) RNA-seq (FPKM) 50 10 50 1.0 1.5 6 2.0 50 1.0 4 25 0.5 5 25 1.0 25 0.5 2 0.0 0 0.0 0 0 0 0 0.0 C T39 C+P.v. T39+P.v. C T39 C+P.v. T39+P.v. C T39 C+P.v. T39+P.v. C T39 C+P.v. T39+P.v. RNA-seq (FPKM)

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