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The Cool Season Food Legume Database: An Integrated Resource for Basic, Translational and Applied Research. Dorrie Main, Chun-Huai Cheng, Stephen Ficklin, Marwa Sanad, Sook Jung, Taein Lee, Ping Zheng, Clarice Coyne, Rebecca McGee and Keithanne Mockaitis. Outline. Introduction

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Outline

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  1. The Cool Season Food Legume Database: An Integrated Resource for Basic, Translational and Applied Research Dorrie Main, Chun-Huai Cheng, Stephen Ficklin, Marwa Sanad, Sook Jung, Taein Lee, Ping Zheng, Clarice Coyne, Rebecca McGee and Keithanne Mockaitis

  2. Outline • Introduction • Data and function overview • Future development • Acknowledgements

  3. What is the CSFL Genome Database? • A pulse database focusing on providing centralized access to tools and data to enable basic, translational and applied research in pea, chickpea and lentil. • Built using the open-source, user-friendly, Tripal database infrastructure used by several other databases. • Collaborative module development and data exchange with LIS and KnowPulse

  4. www.coolseasonfoodlegume.org

  5. Species Pages

  6. Data Overview

  7. Trait/Marker Data and Tools • Collecting all publicly available trait (MLT/QTL) and marker data for pea, chickpea and lentil • Add associated markers • Assign plant ontology to traits • QTL search site available • Marker search site available • Obtain associated map data and more detailed marker information from authors

  8. Search Traits

  9. Trait Search Results

  10. QTL Details Page

  11. Search Markers

  12. Search Markers

  13. Search Markers

  14. Search Markers

  15. Search Markers

  16. Marker Search Results Will also add map position and germplasm

  17. Marker Details Page Will also add more data where it is available, genetic map, location on genome(s)

  18. Sequence Search

  19. Sequence Search Results

  20. Search Details Page

  21. Genome Viewer: GBrowse

  22. Future Developments - 2014 • Submit an NRSP for core development of Tripal and database support for 24 crops • Adding a gene search site • Generating a pea unigene v3 • Adding genomic/genetic data for fava bean • Continue to add genomic/genetic data for pea, chickpea and lentil • Start to create a breeders toolbox

  23. Acknowledgements • Mainlab Bioinformatics Team • USDA Grain Legumes Team • USDA Plant Introduction Team • WSUDepartment of Horticulture • Legume Information System • University of Saskatchewan Pulse Crop Research Group • USDA Specialty Crop ResearchProgram grants for tfGDR andRosBREED (2009-2013)

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