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Building and End-to-end System for Long Term Soil Monitoring

Building and End-to-end System for Long Term Soil Monitoring. Katalin Szlávecz, Alex Szalay, Andreas Terzis, Razvan Musaloiu-E., Sam Small, Josh Cogan, Randal Burns The Johns Hopkins University Jim Gray, Stuart Ozer Microsoft Research. Motivation for Building a Sensor Network.

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Building and End-to-end System for Long Term Soil Monitoring

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  1. Building and End-to-end System for Long Term Soil Monitoring Katalin Szlávecz, Alex Szalay, Andreas Terzis, Razvan Musaloiu-E., Sam Small, Josh Cogan, Randal Burns The Johns Hopkins University Jim Gray, Stuart Ozer Microsoft Research

  2. Motivation for Building a Sensor Network Monitoring: background data, trends => • Soil animal activity/metabolic processes depend on moisture, temperature • Frequent visits disturb the sites • Soil respiration, trace gas fluxes • Better input for terrestrial hydrology models • CS: Build and learn from a deployed system

  3. Spatio-temporal Heterogeneity of the Soil Ecosystem

  4. Heterogeneity • Sampling problem • Scaling problem • Large scale estimates?

  5. Capturing Heterogeneity at Mesoscale: Wireless Sensor Networks • Small computers with radio transmitter • Each connected to multiple sensors (moisture, air and soil temperature, light) • Automatic data upload

  6. Architecture

  7. 2m 2m 8m Network Design • Ten mote network • Each mote • samples every min • data stored in FLASH • status every 2 min, wait for data request • Single hop network • Gateway connected to campus network

  8. Temperature SensorCalibration Calibrationsin the Lab Mote Resistor Calibration Temperature sensorA/D units SoilTemperature Resistance Reference voltageA/D units Voltage Moisture SensorCalibration Moisture sensorA/D units Voltage Resistance Water Potential Light IntensityA/D units Voltage Air TemperatureA/D units CPU clock TemperatureConversion Soil Water Potential->Volumetric Conversion UTC DateTime Air TemperatureCelsius Water ContentVolumetric From Raw Data to Useful Quantities

  9. Current Status Olin Deployment • Operating since Sep 2005 • Over 8M data points • Winding down

  10. Database/Datacube • SQL Server 2005 database • Rich metadata stored in DB • Adopted from astronomy: NVO • Data access through web services • Graphical interface • DataCube under construction(multidimensional summary of data)

  11. Online Data Access

  12. all year Season of Year season all Week of Season week Site day Patch Day of Season Hour of Day hour all sensor tenMinute all category Measurement all depth Sensor Datacube Dimension Model

  13. Lessons Learned: Wireless Sensor Networks • Network lifetime is predictable  • Nodes continue operate despite large environmental fluctuations  • Waterproofing is still an issue Bathtub test

  14. Lessons Learned: Wireless Sensor Networks II • Single-hop network: transmission range is considerably shorter than in lab due to foliage • Relay node helps  • Low level programming is still required  • Importance of sensor uniformity is essential • Switch to Echo sensors 

  15. Lessons Learned: Data Systems • We got real data, end-to-end !  • Sensors respond to environmental changes  • Database from off-the-shelf components  • Getting high level summaries : DataCube  • We need a fully automated pipeline: the current two manual steps are still too labor intensive 

  16. Additional Deployments I • Leakin Park • Urban forest, BES permanent plot • Since March 06

  17. Additional Deployments II • Baltimore Polytechnic High School • Two days ago

  18. Integration of Sensor Data into Baltimore Ecosystem Study Projects • Urban-rural gradient studies • Water and Carbon Cycling • 200 node network at Cub Hill • Ecology of invasive species • Less fluctuating? More refuges? • Light composition – onset of reproduction • Spatio-temporal patterns of soil C and N cycling • Attachment of additional gas sensors

  19. Many different land use /land management types Different soil conditions, soil communities Plan: to deploy 200 motes in summer 06 Neighborhood Scale Heterogeneity: Cub Hill CO2 Flux tower Maps by E. Ellis and D. Cilento, Dept. of Geography, UMBC

  20. Acknowledgement • Microsoft Research • The Gordon and Betty Moore Foundation • Seaver Foundation • Gordon Bell • Allison Smykel, Katy Juhaszova

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