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NCCS User Forum

NCCS User Forum. 24 March 2009. Agenda. Welcome & Introduction Phil Webster, CISTO Chief. Current System Status Fred Reitz, Operations Manager. NCCS Compute Capabilities Dan Duffy, Lead Architect. User Services Updates Bill Ward, User Services Lead. Questions and Comments

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NCCS User Forum

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  1. NCCS User Forum 24 March 2009

  2. Agenda Welcome & Introduction Phil Webster, CISTO Chief Current System Status Fred Reitz, Operations Manager NCCS Compute Capabilities Dan Duffy, Lead Architect User Services Updates Bill Ward, User Services Lead Questions and Comments Phil Webster, CISTO Chief

  3. Key Accomplishments • Incorporation of SCU4 processors into general queue pool • Acquisition of analysis system

  4. Agenda Welcome & Introduction Phil Webster, CISTO Chief Current System Status Fred Reitz, Operations Manager NCCS Compute Capabilities Dan Duffy, Lead Architect User Services Updates Bill Ward, User Services Lead Questions and Comments Phil Webster, CISTO Chief

  5. Key Accomplishments • SCU4 processors added to the general queue pool on Discover • SAN implementation • Improved data sharing between Discover and Data Portal • RAID 6 implementation

  6. Discover Utilization Past Yearby Month • 9/4/08 – SCU3 (2064 cores added) • 2/4/09 – SCU4 (544 cores moved from test queue) • 2/19/09 – SCU4 (240 cores moved from test queue) • 2/27/09 – SCU4 (1280 cores moved from test queue)

  7. Discover Utilization Past Quarterby Week • 2/4/09 – SCU4 (544 cores moved from test queue) • 2/19/09 – SCU4 (240 cores moved from test queue) • 2/27/09 – SCU4 (1280 cores moved from test queue)

  8. Discover CPU ConsumptionPast 6 Months (CPU Hours) • 9/4/08 – SCU3 (2064 cores added) • 2/4/09 – SCU4 (544 cores moved from test queue) • 2/19/09 – SCU4 (240 cores moved from test queue) • 2/27/09 – SCU4 (1280 cores moved from test queue)

  9. Discover Queue Expansion FactorDecember – February Weighted over all queues for all jobs (Background and Test queues excluded) Eligible Time + Run Time Run Time

  10. Discover Job Analysis – February 2009

  11. Discover Availability December through February availability • 4 outages • 2 unscheduled • 0 hardware failures • 1 user error • 1 extended maintenance window • 2 scheduled • 11.7 hours total downtime • 1.2 unscheduled • 10.5 scheduled Outages • 2/11 – Maintenance (Infiniband and GPFS upgrades, node reprovisioning), 10.5 hours – scheduled outage plus extension • 11/12 – SPOOL filled due to user error, 45 minutes • 1/6 – Network line card replacement, 30 minutes – scheduled outage Maintenance (scheduled plus extension) – Infiniband, GPFS upgrades, node reprovisioning Network line card maintenance SPOOL filled

  12. Current Issues on Discover:GPFS Hangs • Symptom: GPFS hangs resulting from users running nodes out of memory. • Impact: Users cannot login or use filesystem. System Admins reboot affected nodes. • Status: Implemented additional monitoring and reporting tools.

  13. Current Issues on Discover:Problems with PBS –V • Symptom: Jobs with large environments not starting. • Impact: Jobs placed on hold by PBS. • Status: Awaiting PBS 10.0 upgrade. In the interim, don’t use –V to pass full environment, instead use –v or define necessary variables within job scripts.

  14. Future Enhancements • Discover Cluster • Hardware platform • Additional storage • Data Portal • Hardware platform • Analysis environment • Hardware platform • DMF • Hardware platform • Additional disk cache

  15. Agenda Welcome & Introduction Phil Webster, CISTO Chief Current System Status Fred Reitz, Operations Manager NCCS Compute Capabilities Dan Duffy, Lead Architect User Services Updates Bill Ward, User Services Lead Questions and Comments Phil Webster, CISTO Chief

  16. FY09 Operating PlanBreakdown of Major Initiatives Analysis System Integration Large scale disk and interactive analysis nodes Pioneer users in April; full production in June FY09 Cluster Upgrade Two scalable compute units (approximately 4K cores) Additional 40 TF of Intel Nehalem processors To be completed by July (subject to vendor availability of equipment) Data Portal Enhance services within the data portal to serve IPCC and other data to the Earth Systems Grid (ESG) and PCMDI Actively looking for partners To be completed by the end of FY09 Data Management Concept of operations still being worked out Actively looking for partners Plan is to have some amount of capability based on iRODS rolled out by the end of FY09 DMF Migration from Irix to Linux Move DMF equipment out of S100 into E100 SGI dropping support for DMF on Irix; will re-use Palm (SGI Linux) system as the new DMF server To be completed by June

  17. Representative Architecture Existing Planned for FY09 Future Plans NCCS LAN (1 GbE and 10 GbE) Data Portal Login Existing Discover 65 TF Analysis FY09 Upgrade ~40 TF Future Upgrades TBD Data Gateways Data Management Viz Direct Connect GPFS Nodes ARCHIVE GPFS I/O Nodes GPFS I/O Nodes GPFS I/O Nodes Disk ~300 TB GPFS Disk Subsystems ~ 1.3 PB Tape ~8 PB Management Servers License Servers GPFS Management PBS Servers Other Services Internal Services

  18. Benefits of the Representative Architecture Breakout of services Separate highly available login, data mover, and visualization service nodes These can be available even when upgrades are occurring within the cluster elsewhere Data Mover Service: these service nodes allow for Data to be moved between the discover cluster and the archive Access of data within the GPFS system to be served to the data portal WAN accessible nodes within the compute cluster Users have requested nodes within compute jobs to have access to the network The NCCS is currently configuring network accessible nodes to be scheduled in PBS jobs so users can run sentinel type processes, easily move data via NFS mounts, etc. Internal services run on dedicated nodes Allows for the vertical components of the architecture to go up and down independently Critical services are run in a high availability mode Can even allow for licenses to be served outside the NCCS

  19. Analysis Requirements Phase 1: Reproduce Current SGI Capabilities Fast access to all GPFS and Archive file systems FORTRAN, C, IDL, GrADS, Matlab, Quads, LATS4D, Python Visibility and easy access to post data to the data portal Interactive display of analysis results Beyond Phase 1: Develop Client/Server Capabilities Extend analytic functions to the user’s workstations Subsetting functions In-line and Interactive visualization Synchronize analysis with model execution See the intermediate data as they are being generated Generate images for display back to the user’s workstations Capture and store images during execution for later analysis

  20. Analysis System Technical Solution Analysis Compute 10 GbE LAN NFS, bbftp, scp Single Stream: 10-50 MB/sec Aggregate: 1-1.5 GB/sec 16 cores 256GB Discover Multiple Interfaces IB DMF Archive Large Network Pipes I/O Servers 4 MDS & 16 NSD Direct GPFS I/O Connections ~3 GB/sec per node IP over IB Single Stream: 250-300 MB/sec Aggregate: ~600 GB/sec Fibre Channel SAN Fibre Channel SAN Additional Storage Archive File Systems GPFS Large staging area to minimize data recall from archive 20

  21. Analysis System Technical Details 8 IBM x3950 Nodes 4 socket, Quad-core (16 cores per server, 128 cores total) Intel Dunnington E7440, 2.4 GHz cores with 1,066 MHz FSB 256 GB memory (16 GB/core) 10 GbE network interface Can be configured as a single system image up to 4 servers (64 cores and 1 TB of RAM) GPFS File System Direct connect I/O servers ~3 GB/sec per Analysis Node Analysis nodes will see ALL GPFS file systems, including the nobackup areas currently in use; no need to “move” data into the analysis system Additional Disk Capacity 2 x DDN S2A9900 SATA disk subsystems ~900 TB RAW capacity Total of ~6 GB/sec throughput 21

  22. Analysis System Timeline • 1 April 2009: Pioneer/Early Access Users • If you would like to be one of the first, please let us know. • Contact user services. • Provide us with some details as to what you may need. • 1 May 2009: Analysis System in Production • Continued support for analysis users migrating off of Dirac. • 1 June 2009: Dirac Transition • Dirac no longer used for analysis. • Migrate DMF from Irix to Linux. 22

  23. Agenda Welcome & Introduction Phil Webster, CISTO Chief Current System Status Fred Reitz, Operations Manager NCCS Compute Capabilities Dan Duffy, Lead Architect User Services Updates Bill Ward, User Services Lead Questions and Comments Phil Webster, CISTO Chief

  24. What Happened to My Ticket? First, it comes to me at USG for aging… Then, if it makes it into FootPrints, it will be eaten by trolls… What happened to my ticket?

  25. Ticket Closure Percentilesfor the Past Quarter

  26. Issue: Commands to Access DMF • Implementation of dmget and dmput • Status: resolved • Enabled on Discover login nodes • Performance has been stable since installation on 11 Dec 09

  27. Issue: Parallel Jobs > 1500 CPUs • Many jobs won’t run at > 1500 CPUs • Status: resolved • Requires a different version of the DAPL library • Since this is not the officially supported version, it is not the default

  28. Issue: Enabling Sentinel Jobs • Need capability to run a “sentinel” subjob to watch a main parallel compute subjob in a single PBS job • Status: in process • Requires an NFS mount of data portal file systems on Discover gateway nodes (done!) • Requires some special PBS usage to specify how subjobs will land on nodes

  29. Issue: Poor Interactive Response • Slow interactive response on Discover • Status: under investigation • Router line card replaced • Automatic monitoring instituted to promptly detect future problems • Seems to happen when filesystem usage is heavy (anecdotal)

  30. Issue: Getting Jobs into Execution • Long wait for queued jobs before launching • Reasons • SCALI=TRUE is restrictive • Per user & per project limits on number of eligible jobs (use qstat –is) • Scheduling policy: first-fit on job list ordered by queue priority and queue time • Status: under investigation • Individual job priorities available in PBS v10 may help with this

  31. Use of Project Shared Space • Please begin using “$SHARE” instead of “/share” since the shared space may move • Try to avoid having soft links that explicitly point to “/share/…” for the same reason

  32. Dirac Filesystems • Dirac’s disks are being repurposed for primary archive cache • Hence, the SGI file systems on Dirac will be going away • Users will need to migrate data off of the SGI home, nobackup, and share file systems • Contact User Services if you need assistance.

  33. Integrated Performance Monitor (IPM) • Provides • Short report of resource consumption, and • Longer web-based presentation • Requires • Low runtime overhead (2%-5%) • Linking with MPI wrapper library (your job) • Newer version of OS for complete statistics (our job)

  34. IPM Sample Output

  35. IPM Sample Output

  36. Access to Analysis System • Pioneer access scheduled for 1 April • All Dirac analysis users welcome as pioneers • Initially, no charge against your allocation • If you have no allocation in e-Books,contact USG and we will resolve

  37. Future User Forums • The next three NCCS User Forums • 23 June, 22 Sep, 8 Dec • All on Tuesday • All 2:00-3:30 PM • All in Building 33, Room H114 • Published • On http://nccs.nasa.gov/ • On GSFC-CAL-NCCS-Users

  38. Agenda Welcome & Introduction Phil Webster, CISTO Chief Current System Status Fred Reitz, Operations Manager NCCS Compute Capabilities Dan Duffy, Lead Architect User Services Updates Bill Ward, User Services Lead Questions and Comments Phil Webster, CISTO Chief

  39. Feedback • Now – Open discussion to voice your … • Praises • Complaints • Suggestions • Later to NCCS Support • support@nccs.nasa.gov • (301) 286-9120 • Later to USG Lead • William.A.Ward@nasa.gov • (301) 286-2954

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