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US GBIF Tools and Services

Giri Palanisamy NBII , ORNL Mike Frame NBII, USGS. US GBIF Tools and Services. August 12 th , 2010. NBII-GBIF Services. Hosts GBIF mirror for North America Various data extraction services and visualizations IPT prototype installation Trainings/Workshops on DiGIR and IPT

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US GBIF Tools and Services

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  1. Giri Palanisamy NBII, ORNL Mike Frame NBII, USGS US GBIF Tools and Services August 12th , 2010

  2. NBII-GBIF Services • Hosts GBIF mirror for North America • Various data extraction services and visualizations • IPT prototype installation • Trainings/Workshops on DiGIR and IPT • Operates UDDI service • Supports several Cooperative agreements at Museum’s & Herbaria in US

  3. GBIF Data Portal GBIF Site: http://data.gbif.org U.S. Mirror: http://us.mirror.gbif.org World: - 201,275,468 occurrence records - 318 data providers USA: - 83,607,198 records - 91 data providers

  4. Web services to query GBIF data OGC web services: • Taxon data service: http:// us.mirror.gbif.org/ws/rest/taxon • Occurrence record data service: http:// us.mirror.gbif.org/ws/rest/occurrence • Occurrence density data service: http:// us.mirror.gbif.org/ws/rest/density • Dataset metadata service: http:// us.mirror.gbif.org/ws/rest/resource • Data provider metadata service: http:// us.mirror.gbif.org/ws/rest/provider • Data network metadata service: http:// us.mirror.gbif.org/ws/rest/network • More information: http://wiki.gbif.org/dadiwiki/wikka.php?wakka=DeveloperAPIs • Web services to query US GBIF data (under development)

  5. GBIF Data Analysis And Extractions for NBII Partners • Example GBIF Data Extractions: • Extract data for specific State(s), countries. • Extract data for list of species (plants, birds, butterflies etc..)

  6. GBIF Data Analysis Extractions Cont..

  7. NBII Customized widgets for exploring GBIF data GBIF Widget for Vermont Area

  8. Web Services to Query US GBIF Data • Based on NBII CH/Lucene/Solr index • Species occurrences query • http://nbii-gbif.ornl.gov/us_solr/select?indent=on&version=2.2&q=scientific_name%3A%22Abildgaardia ovata%22&start=0&rows=100&fl=latitude%2Clongitude&qt=standard&wt=standard&explainOther=&hl.fl=

  9. Simple Web Services Client to get occurrence counts http://mercury.ornl.gov/gbifUtility/

  10. Other NBII-GBIF services • GBIF collection metadata records (EML) are now available in the NBII metadata clearinghouse and in the NBII catalog search. • IPT prototype installation available in the NBII servers (for testing prupose)

  11. Species Level xml files for NBII Catalog search

  12. GBIF Species Records in NBII Catalog Search

  13. NBII Search screen with GBIF records here……

  14. Current and future tasks • Provide various easy-to-use visualization tools and web services for extracting NA GBIF data (local, state, regional, country, and thematic level) • Enable county level GBIF data visualization and extraction • Extend the collaboration activities with new projects such as USVH, DataONE etc.. • Enable species mashups on the NBII metadata records • Evaluate broader services for all GBIF data

  15. Questions, Comments Mike Frame mike_frame@usgs.gov Giri Palanisamy palanisamyg@ornl.gov

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