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Overview of Bioinformatics Development in Asia Pacific APBioNet

EMBnet AGM report. Overview of Bioinformatics Development in Asia Pacific APBioNet. Dr TAN Tin Wee Dr Christoph Sensen Professor LUO Jingchu Asia Pacific Bioinformatics Network. Asia Pacific Bioinformatics Survey - 1997.

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Overview of Bioinformatics Development in Asia Pacific APBioNet

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  1. EMBnet AGM report Overview of Bioinformatics Development in Asia Pacific APBioNet Dr TAN Tin Wee Dr Christoph Sensen Professor LUO Jingchu Asia Pacific Bioinformatics Network

  2. Asia Pacific Bioinformatics Survey - 1997 • APEC Asia Pacific Economic Cooperation (analogous to early EU) commissioned survey • Due to importance of Bioinformatics and Biocomputing to existing biotechnology programs in Asia Pacific • Japan - NIG - DDBJ, Genomenet, KEGG, MAFFIN many others... • Australia - ANGIS, EMBnet node and spread to Malaysia MSC-BIT • China - Peking University second EMBnet node • Singapore - BIC • India - Bioinformatics Center, Pune • Relatively not well developed, but rapidly growing http://www.apbionet.org/what/doc.html http://www.apbionet.org/docs/apec-16TEL-report.html

  3. Proposal of Survey • Formation of APBioNet • Use of Internet • Need to improve network performance and infrastructure in the region - ride on APAN advanced network infrastructure • Creation of shared bioinformatics resources • Develop national resources in APEC economies • Technology transfer from advanced countries

  4. Formation of APBioNetOrigins and Milestones • Early 1997 - planning • Mar 1997 APEC Bioinformatics Survey - APEC TEL 15 Mexico City endorsed • Sep 1997 Bioinformatics Survey submitted - APECTEL16 Wellington • Jan 1998 - Inaugural Summit - Pacific Symposium for Biocomputing PSB’98, Hawaii • Mar 1998 - APAN Bioinformatics Working Group • Apr 1998 - APBioNet and APAN-APBioNet Joint Networking Project endorsed by APEC TEL17 • June 1998 - APAN approval of networking project • July 1998 - Second General Meeting - ISMB’98 Montreal

  5. Conferences APBioNet Training Program Seminars Workshops Courses R&D Network Connectivity Program Advanced Network Infrastructure Resources Program Applications Development BioMirrors Databases APAN Computational Bio-Grid National Nodes and BioNetworks EMBnet

  6. Achievements • Bioinformatics Survey 1997 • APEC Endorsement 1997/8 • APAN Cooperation 1998 - First approved project in APAN • More than 10 economies involved - Australia, Canada, China, HongKong, India, Japan, Korea, Malaysia, Philippines, Russia, Singapore, Thailand (soon), USA • More than half a dozen co-opted conferences/meetings in Canada, China, Japan, Korea, Russia, Singapore in this year alone. • 20 organisations in these countries • won APEC TEL designation as a prioritized project and APEC recognition for pioneer project in APII • www.apbionet.org website and mailing lists announce@apbionet.org • Supercomputing SC’98 collaborative demonstration(submitted)

  7. BRIC Novosibirsk Beijing Univ NCBI, NIH (soon) IUBio NIG NCC GenomeNet MAFFIN CBR HKBIC SSRL IRRI Pune SDSC BIC MSC-BIT ANGIS APBioNet members

  8. APBioNet rides on APAN Advanced Network and Commodity Internet

  9. Activities • Co-opted and APBioNet conferences/ meetings/ symposia - joint APBioNet meetings • Training • APBioNet General meetings Jan’99 Hawaii PSB and Jun/Jul’98/99 ISMB • Bioinformatics Survey • Shared Computational and Database Resources • Advanced Networking Project with APAN • Special Interest Groups and Working Groups • Liaison with EMBnet

  10. Challenges ahead • Start Bioinformatics and Biocomputing Initiative in each AP country to meet the demands of global bionformatics initiative • Advanced Integration of Shared Databases • Continue to Build Advanced Networking Infrastructure • Increase penetration to individual Biological researchers • Create and implement user-friendly collaborative tools for biological researchers • Cooperate with other regional groups such as EMBnet

  11. APBioNet and EMBnet • Seek assistance from EMBnet • Database mirroring and expertise • Computational facilities • Training Courses • Collaborative Projects with EMBnet • Global BioMirrors • Joint Network Connectivity project to link up European research networks with APAN • Joint Research

  12. APBioNet Contacts Dr Christoph Sensen, • Canadian Bioinformatics Resource Professor Luo Jingchu, • Centre of Bioinformatics, Peking University Dr Tan Tin Wee <tinwee@pobox.org.sg> • Director, Bionformatics Centre BIC - http://www.bic.nus.edu.sg • Associate Director, Center for Internet Research CIR - http://www.cir.nus.edu.sg • Chairman, Asia Pacific Networking Group APNG - http://www.apng.org • Co-Director (User Community) Asia Pacific Advanced Network APAN - http://www.apan.net • Contact, APBioNet (Singapore) - http://www-sg.apbionet.org • Webmaster, APBioNet HomePage - http://www.apbionet.org

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