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Neuroimaging and MRI Physics. Other Resources. These slides were condensed from several excellent online sources. Credit is given where appropriate. If you would like a more thorough introductory review of MR physics, see the following:1. Robert Cox's slideshow, (f)MRI Physics with Hardly Any Mat
 
                
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1. UCLA  NS 172/272/Psych 213  Brain Mapping and Neuroimaging Instructor:   Ivo Dinov, 
     	Asst. Prof. In Statistics and Neurology
  University of California, Los Angeles,  Winter  2006
http://www.stat.ucla.edu/~dinov/
http://www.loni.ucla.edu/CCB/Training/Courses/NS172_2006.shtml 
2. Neuroimaging and MRI Physics 
3. Other Resources 
4. References 
“Foundation of Medical Imaging,” Z.H. Cho, J.P. Jones, M. Singh, John Wiley & Sons, Inc., New York 1993, ISBN 0-471-54573-2
“Principles of Medical Imaging,” K.K. Shung, M.B. Smith, B. Tsui, Academic Press, San Diego 1992, ISBN 0-12-640970-6
“Handbook of Medical Imaging,” Vol. 1, Physics and Psychophysics, J. Beutel, H. L. Kundel, R. L. Van Metter (eds.), SPIE Press 2000, ISBN 0-8194-3621-6
Brain Mapping: The Methods, by Arthur W. Toga & John Mazziotta  
5. Introduction: What is Medical Imaging? Goals:  
Create images of the interior of the living human body from the outside for diagnostic purposes. 
Biomedical Imaging is a multi-disciplinary field involving
Physics (matter, energy, radiation, etc.)
Math (linear algebra, calculus, statistics)
Biology/Physiology
Engineering (implementation)
Computer science (image reconstruction, signal processing, visualization) 
6. BMI methods: X-Ray imaging Year discovered:			1895 (Röntgen, NP 1905)
Form of radiation: 			X-rays = electromagnetic radiation 					(photons) 
Energy / wavelength of radiation:	0.1 – 100 keV / 10 – 0.01 nm					(ionizing)
Imaging principle:			X-rays penetrate tissue and 					create shadowgram of 						differences in density.  
Imaging volume:			Whole body
Resolution:				Very high (sub-mm)
Applications:				Mammography, lung diseases,					orthopedics, dentistry, 						cardiovascular, GI, neuro 
7. Electromagnetic Spectrum 
8. Radio wave devices 
9. BMI methods: X-Ray Computed Tomography Year discovered:			1972 (Hounsfield, NP 1979)
Form of radiation: 			X-rays
Energy / wavelength of radiation:	10 – 100 keV / 0.1 – 0.01 nm 					(ionizing)
Imaging principle:			X-ray images are taken under 					many angles from which 						tomographic ("sliced") views are 					computed
Imaging volume:			Whole body
Resolution:				High (mm)
Applications:				Soft tissue imaging (brain, 						cardiovascular, GI)
 
10. Electromagnetic Spectrum 
11. BMI methods: Nuclear Imaging (PET/SPECT) Year discovered:			1953 (PET), 1963 (SPECT)
Form of radiation: 			Gamma rays
Energy / wavelength of radiation:	> 100 keV / < 0.01 nm					 (ionizing)
Imaging principle:			Accumulation or "washout" of 					radioactive isotopes in the body 					are imaged with x-ray cameras. 
Imaging volume:			Whole body
Resolution:				Medium – Low (mm - cm)
Applications:				Functional imaging (cancer 					detection, metabolic processes, 					myocardial infarction) 
12. Electromagnetic Spectrum – PET/SPECT 
13. Functional Brain Imaging - Positron Emission Tomography (PET) 
14. Functional Brain Imaging - Positron Emission Tomography (PET) 
15. Functional Brain Imaging - Positron Emission Tomography (PET) 
16. BMI methods: Magnetic Resonance Imaging Year discovered:			1945 (Bloch & Purcell)					1973 (Lauterburg, NP 2003)					1977 (Mansfield, NP 2003) 					1971 (Damadian, SUNY DMS)
Form of radiation: 			Radio frequency (RF)					 (non-ionizing)
Energy / wavelength of radiation:	 10 – 100 MHz / 30 – 3 m 					(~ 10-7 eV)
Imaging principle:			Proton spin flips are induced, and 					the RF emitted by their response 					(echo) is detected. 
Imaging volume:			Whole body
Resolution:				High (mm)
Applications:				Soft tissue, functional imaging 
17. Electromagnetic Spectrum 
18. BMI methods: Ultrasound Imaging Year discovered:			1952 (Norris, clinical: 1962)
Form of radiation: 			        Sound waves (non-ionizing)
Frequency / wavelength of radiation:	 1 – 10 MHz /  1 – 0.1 mm 					
Imaging principle:			   Echoes from discontinuities in 					   tissue density/speed of sound   					   are registered. 
Imaging volume:			          < 20 cm
Resolution:				High (mm)
Applications:				Soft tissue, blood flow (Doppler) 
19. Electromagnetic Spectrum 
20. BMI methods: Optical Tomography Year discovered:			1989 (Barbour)
Form of radiation: 		           Near-infrared light (non-ionizing)
Energy / wavelength of radiation:	  ~ 1 eV/ 600 – 1000 nm
Imaging principle:			Interaction (absorption, scattering) 				of light w/ tissue. 
Imaging volume:			~ 10 cm
Resolution:				Low (~ cm)
Applications:			Perfusion, functional imaging 
21. BMI methods: Optical Tomography 
22. Electromagnetic Spectrum 
23. Recipe for MRI 
24. History of NMR 
25. History of fMRI 
26. Necessary Equipment 
27. The Big Magnet 
28. Magnet Safety - The whopping strength of the magnet makes safety essential. Things fly – Even big things! 
29. Subject Safety 
30. Protons 
31. What nuclei exhibit this magnetic moment (and thus are candidates for NMR)? 
32. Outside magnetic field – random orientationIn Mag Field - Protons align with field 
33. Radio Frequency 
34. Larmor Frequency 
35. RF Excitation 
36. Cox’s Swing Analogy 
37. Relaxation and Receiving 
38. T1 and TR 
39. Spatial Coding:  Gradients 
40. How many fields are involved after all? 
41. Precession In and Out of Phase 
42. T2 and TE 
43. Echos 
44. T1 vs. T2 
45. T1 vs. T2 – contrast and noise 
46. Properties of Body Tissues 
47. MRI of the Brain - Sagittal 
48. MRI of the Brain - Axial 
49. MRI Quality Determinants 
50. MRI Quality Determinants – period = 1/frequency 
51. K-Space – an MRI literature fancy name for Fourier space 
52. A Walk Through (sampling from ) K-space 
53. T2* 
54. Susceptibility 
55. Signal-to-Noise Ratio (SNR) 
56. Motion Correction