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WP4 Zagreb, 21.june 2007

WP4 Zagreb, 21.june 2007. WP4 Knowledge representation, discovery, and management T4.1 Data warehouse for knowledge discovery T4.2 Data understanding and preparation T4.3 Implementation of knowledge discovery processes T4.4 Ontologies and knowledge representation. WP4

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WP4 Zagreb, 21.june 2007

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  1. WP4Zagreb, 21.june 2007

  2. WP4 Knowledge representation, discovery, and management T4.1 Data warehouse for knowledge discovery T4.2 Data understanding and preparation T4.3 Implementation of knowledge discovery processes T4.4 Ontologies and knowledge representation

  3. WP4 Knowledge representation, discovery, and management T4.1 Data warehouse for knowledge discovery T4.2 Data understanding and preparation T4.3 Implementation of knowledge discovery processes T4.4 Ontologies and knowledge representation ended 1.may to end on 1. august ♦ MS4.1 !!!

  4. WP4 Knowledge representation, discovery, and management T4.1 Data warehouse for knowledge discovery T4.2 Data understanding and preparation T4.3 Implementation of knowledge discovery processes T4.4 Ontologies and knowledge representation ended 1.may till 1. september till M33 to end on 1. august ♦ MS4.1 !!!

  5. WP4 Knowledge representation, discovery, and management T4.1 Data warehouse for knowledge discovery T4.2 Data understanding and preparation T4.3 Implementation of knowledge discovery processes T4.4 Ontologies and knowledge representation D21 to end on 1. august ♦ MS4.1 !!!

  6. WP4 Knowledge representation, discovery, and management T4.1 Data warehouse for knowledge discovery T4.2 Data understanding and preparation T4.3 Implementation of knowledge discovery processes T4.4 Ontologies and knowledge representation D21 D22 ♦ MS4.1

  7. WP4 Knowledge representation, discovery, and management T4.1 Data warehouse for knowledge discovery T4.2 Data understanding and preparation T4.3 Implementation of knowledge discovery processes T4.4 Ontologies and knowledge representation D29 month 24 MS4.2 ♦ MS4.1

  8. WP4 Knowledge representation, discovery, and management T4.1 Data warehouse for knowledge discovery T4.2 Data understanding and preparation T4.3 Implementation of knowledge discovery processes T4.4 Ontologies and knowledge representation D21 D29 D22

  9. WP4 Knowledge representation, discovery, and management T4.1 Data warehouse for knowledge discovery T4.2 Data understanding and preparation T4.3 Implementation of knowledge discovery processes T4.4 Ontologies and knowledge representation D21 D29 D22 + integration of knowledge representation with DSS

  10. WP3 WP5 WP4 DSS HF Middleware Knowledge Base During the review meeting in Brussels pointed out as very relevant and very difficult problem

  11. What has been done in the period from the last meeting: • T4.1 • - Functional specification of the data transformation from patient data defined by the 'Case report form' into the complete set of attributes prepared for knowledge discovery has been done. • Open source DW software package Pentaho has been extensively studied and its application tested for some multi-patient managerial tasks and single patients decision support purposes. • Work on D21.

  12. T4.2 • Retrospective data from UNICZ have been transformed to the standard Weka (‘arff’) and ‘illm’ form. Data have been cleaned manually by elimination of obvious outliers and sparsely populated attributes. • Retrospective ANMCO data set has been transformed to the Weka format. • D21 on data preparation has been started.

  13. T4.3 • Experiments with contrast set mining and Kernel based Support Vector Machine (?) algorithms have started in parallel on available retrospective data. • ANMCO seems as a good simulation of data that will be collected by the platform (except continuous data monitoring). • We have some results with UNICZ and ANMCO data, but the results are not very optimistic.

  14. T4.4 • HF ontology has been upgraded. • Meeting in Milan with UNIMIB and AUXOL -> procedural knowledge related to HF has been prepared in the form of 10 sets of rules. • In cooperation with JUMC some of the rule sets have been discussed and improved. • Additionally, for some common HF related decision problems medical plans have been developed. • ontology + rules + medical plans are on line on • http://lis.irb.hr/heartfaid/

  15. T4.4 continued • encountered problems: • developed HF ontology is large but not appropriate for reasoning (taxonomy) ! • Open issue: how to integrate ontology (descriptive knowledge) and rules (procedural knowledge) ? • possible solution: • development of the procedural ontology + development of the ontology interpreter for DSS interface we have devoted a lot of work to this idea!

  16. WP4 presentation plan: • Knowledge representation for HF domain (D22) - Alan Jović • Demo on procedural ontology and ontology reasoning for DSS support - Marin Prcela • Data warehousing on HF platform (D21) - Tom Šmuc • Discussion on: • a) D21 • b) D22 • c) KB – DSS interface

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