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EMODNET Preparatory Actions

EMODNET Preparatory Actions. Progress Report Chemical Lot Alessandra Giorgetti (OGS) ‏. Second six-monthly progress meeting for ur-EMODNET preparatory actions, 25 May 2010. Second six-monthly progress meeting, 25 May 2010. EMODNET Chemical lot is based on SeaDataNet network of NODC’s.

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EMODNET Preparatory Actions

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  1. EMODNET Preparatory Actions Progress Report Chemical Lot Alessandra Giorgetti (OGS)‏ Second six-monthly progress meeting for ur-EMODNET preparatory actions, 25 May 2010

  2. Second six-monthly progress meeting, 25 May 2010 EMODNET Chemical lot is based on SeaDataNet network of NODC’s • The tender for Chemical data has been prepared by: • A subgroup of NODC's that oversee data collection for the requested geographic areas • The technical partners who further develop and run SDN infrastructure • Specific expertise who coordinate data analyses and validation, and the creation of data products • The largest consortium including 25 partners

  3. Second six-monthly progress meeting, 25 May 2010 Proposed strategy • The following strategy was proposed as approach for the EMODNET pilots, based on SeaDataNet experience: • Develop a high-end dedicated portal, outfitted with a powerful spatial database, that is complemented with WMS, WFS and WCS services (OGC)to serve users and to provide layers for e.g. the other EMODNET portals, the prototype European Atlas of the Seas, and the broad-scale European Marine Habitats map; • Provide data sets for producing interpolated maps with specific resolution for each geographical region, that are loaded and integrated afterwards into the portals’ spatial database; • Include a metadata discovery service in the portal, by adopting the SeaDataNet CDI metadata standard, that inter alia gives clear information about the background data, the access restrictions and distributors; this also ensures the connection of the EMODNET portals with the SeaDataNet distributed infrastructure.

  4. Second six-monthly progress meeting, 25 May 2010 EMODNET Chemical lot uses SeaDataNet V1 infrastructure for the technical set-up: • SDN Standards for background data, metadata and product, • CDI mechanism to access data with data policy, • ODV format for background data exchange, • SDN Security Services for users registrations, and SDN Delivery Services for data access and downloading, • DIVA software tool to produce gridded data products and error maps as NetCDF files, • SDN Products catalogue (CAMIOON system) and SDN Products viewing services for free unlimited discovery, access, visualization and downloading of data products.

  5. Second six-monthly progress meeting, 25 May 2010 New elements developed for EMODNET Chemical pilot: • SDN Vocabulary extended (P021 for CDI and P061 for units covers all chemical parameters selected) - METADATA • SDN Vocabulary extended (P011 for ODV) - DATA • EMODNET Chemical portal – operational • EMODNET Chemical CDI directory –populated • EMODNET Chemical CDI User Interface - launched • EMODNET Products Viewing Services – launched • EMODNET Products Discovery Services – launched • ODV/DIVA software is used to produce integrated maps

  6. Second six-monthly progress meeting, 25 May 2010 SDN Shopping Mechanism Extra function Data access request service Direct data access SDN NODC’s External sources Products metadata EMODNET Data Products Catalogue + OGC viewer + downloading EMODNET Chemical CDI User Interface EMODNET CDI metadata EMODNET Data Products

  7. NORTH SEA BLACK SEA MEDITERRANEAN SEA Second six-monthly progress meeting, 25 May 2010 Chemical lot - Geographic areas

  8. Second six-monthly progress meeting, 25 May 2010 The Chemical parameters • Based on MSFD requirement • Time series, geographically representative • Chemicals selected from 8 groups in 3 matrices • 17selected for product generation in the three regions

  9. Second six-monthly progress meeting, 25 May 2010 WP2 – Data collection and metadata compilation Data collection started with nutrients in the water column, then extended to all other selected chemicals in the water column (organic matter – DOC and TN, …), and to synthetic compounds, hydrocarbonsand heavy metals in the sediments and biota (considering the target species MYTILUS). TARGET FOR 3 REGIONS, data distribution is different • All partners produced ODV files for the regional task leaders (AWI, MHI, HCMR) • All partners produced CDI entries for User interface

  10. Second six-monthly progress meeting, 25 May 2010 DATA PRODUCTS North Sea EMODNET Chemical Buffer SeaDataNet Regional Products Codes Vocabulary Web services Regional QC Product Output (NetCDF) Data Data Input (ODV) Worms CDI metadata Regional Products Data Input (ODV) Product Output (NetCDF) CDI metadata Med Sea Black Sea Regional Products SeaDataNet SeaDataNet Data Input (ODV) Product Output (NetCDF) Local data compliation (ODV) Local data compliation (ODV) Vocabulary Web services Vocabulary Web services Regional QC Regional QC CDI metadata Worms Worms

  11. dissolved + particulate Second six-monthly progress meeting, 25 May 2010 Parameter selected – water column Parameter mapping

  12. Second six-monthly progress meeting, 25 May 2010 Parameter selected - sediment Parameter mapping

  13. Second six-monthly progress meeting, 25 May 2010 Parameter selected - biota Parameter mapping Fixed as target species Mytilus (Edulis/Galloprovincialis)

  14. Second six-monthly progress meeting, 25 May 2010 Progress on data collection and metadata compilation in the three regions

  15. Second six-monthly progress meeting, 25 May 2010 About the Greater North Sea (NERI-MAR)- boundaries for the regional data products -4/62 13/62 -4/49 13/49

  16. Second six-monthly progress meeting, 25 May 2010 About the Greater North Sea (NERI-MAR) - data for the regional data products • data collection take advantage of the existing ICES database DOME • extract from DOME to the regional data pool (EMODNET Chemical Buffer Database) • => North Sea partners only have to report additional datasets to the regional data pool (except nutrients) • Partners: • NERI, ICES, NERC-BODC, IFREMER, BSH-DOD, VLIZ, IMR, RBINS-MUMM, SMHI, RWS/NIOZ.

  17. Second six-monthly progress meeting, 25 May 2010 Data collection - data distribution – North Sea Status 15/5/2010:Samples per parameter per matrix DIVA maps available at the EMODNET portal

  18. Stations Distribution by year Second six-monthly progress meeting, 25 May 2010 Data collection - data distribution – North Sea Nitrate (NO3) in the water column

  19. Stations Distribution by year Second six-monthly progress meeting, 25 May 2010 Data collection - data distribution – North Sea Phosphate (PO4) in water column

  20. Stations Distribution by year Second six-monthly progress meeting, 25 May 2010 Data collection - data distribution – North Sea Total Organic Carbon (%TOC) in sediment

  21. Stations Distribution by year Second six-monthly progress meeting, 25 May 2010 Data collection - data distribution – North Sea TBT in sediment referred to Total Organic Carbon (%TOC) in the sediment

  22. Stations Distribution by year Second six-monthly progress meeting, 25 May 2010 Data collection - data distribution – North Sea TBT in biota (species Mytilus Edulys)

  23. Second six-monthly progress meeting, 25 May 2010 EMODNET water nutrientsData collection in the Black Sea Additional collected NIMRD – heavy metal RIHMI – WDC - DDT MHI – radionuclides

  24. Second six-monthly progress meeting, 25 May 2010 EMODNET water nutrientsDistribution of the profiles

  25. Mediterranean Pool (7986 st) Second six-monthly progress meeting, 25 May 2010 5 spots: • Balearic Sea • Gulf of Lion • North Adriatic Sea • Gulf of Athens • NE Levantine basin

  26. Second six-monthly progress meeting, 25 May 2010 Samples Per Parameter

  27. Second six-monthly progress meeting, 25 May 2010 Selected Nutrients in the water column

  28. Study Area Balearic Sea (3099 st) Second six-monthly progress meeting, 25 May 2010

  29. Second six-monthly progress meeting, 25 May 2010 Mediterranean Data Pool -Balearic Sea

  30. Second six-monthly progress meeting, 25 May 2010 Study Area Gulf of Lion (826 st)

  31. Second six-monthly progress meeting, 25 May 2010 Mediterranean Data Pool -Gulf of Lion

  32. Second six-monthly progress meeting, 25 May 2010 Study Area North Adriatic Sea (2482 st)

  33. Second six-monthly progress meeting, 25 May 2010 Mediterranean Data Pool - North Adriatic Sea

  34. Second six-monthly progress meeting, 25 May 2010 Study Area Gulf of Athens (1543 st)

  35. Second six-monthly progress meeting, 25 May 2010 Mediterranean Data Pool - Gulf of Athens

  36. Second six-monthly progress meeting, 25 May 2010 Study Area NE Levantine basin (36 st)

  37. Second six-monthly progress meeting, 25 May 2010 Total CDI inventory at 12 May 2010 for the EMODNET Chemical P021 terms and target areas.

  38. Second six-monthly progress meeting, 25 May 2010 WP3 – QC/QA and products Maps generation started with nutrients in the water column (3 regions), then extended to other chemicals in the water column, and to synthetic compounds, hydrocarbons and heavy metals in the sediments and biota (considering the target species MYTILUS). The definition of common QC/QA procedures. The definition of common products (regional scales following data availability, global/common scale: depth, grid, time).

  39. Second six-monthly progress meeting, 25 May 2010 Guidelines DIVA maps production • The aim for the guidelines for the DIVA maps production: • To establish a common basis for the maps production with focus on the pre-processing of data and the validation of the produced maps. • The guidelines is divided into four steps: • Data extraction • Pre-processing of data • Maps production • Validation of the produced maps

  40. Second six-monthly progress meeting, 25 May 2010 The concept for the maps production Recommend as the working process for the maps production => guidelines available at: http://www.emodnet-chemistry.eu/portal/portal/emodnet/Data+Products

  41. Second six-monthly progress meeting, 25 May 2010 WP4 – Technical development and portal operation • EMODNET extranet for project documentation – July 2009 • EMODNET Pilot Portal for Chemistry – March 2010 Filled with core services: • Metadata Discovery and Downloading service – May 2010 • Data Products Viewing and Downloading service – May 2010 • Data Products Discovery Catalogue service – May 2010 Live demonstration of EMODNET Portal www.emodnet-chemistry.eu

  42. Second six-monthly progress meeting, 25 May 2010

  43. Second six-monthly progress meeting, 25 May 2010 Web portal – Core services (Metadata & Data)

  44. Second six-monthly progress meeting, 25 May 2010 Web portal – Core services (Data Products)

  45. Second six-monthly progress meeting, 25 May 2010 EMODNET Chemical pilot represent a great challenge: • It is undertaken by a large partnership, needs coordination but bring long-term expertise in collecting, processing, management and giving access to datasets and products • The complexity of the measurements covering 8 groups(pesticides, antifoulants, pharmaceuticals, heavy metals , hydrocarbons, radionuclides, fertilisers, organic matter) on 3 matrices (sediment, water column and biota) • Data collection with priority list to get a first release (a proof of concepts) • The cooperation with EEA and Marine Conventions (OSPAR, HELCOM and BSC) is crucial for data assembling, products definition and QC/QA

  46. Second six-monthly progress meeting, 25 May 2010 • Difficulties represented by data • complexity of the measurements related to different environment • heterogeneity of the sampling (coastal points in time) makes it critical the use of DIVA standard interpolation • Experts and potential users opinion is expected to define the set of product from chemical data • Close cooperation is undergoing with biological lot (OGC standards) for products exchange/merge/harmonization

  47. WP ACTIVITY DESCRIPTION Phase 1 Phase 2 Phase 3 Phase 4 TIME FRAME YEAR 1 YEAR 2 YEAR 3 1 Project Management 1.1 Project coordination 1.2 Project and Technical Coordinators Meetings with EU 1.3 Coordination Group Meetings 1.5 Full Group Meetings 1.4 Technical Coordination 2 Data Collection and Metadata Compilation 2.1 Greater North Sea 2.2 Black Sea 2.3 Mediterranean spots 3 QC/QA and Products 3.1 Guideline with methodology and software 3.2 Quality Control and Quality Assurance 3.3 Data products 4 Technical development and operation 4.1 Portal development - CDI directory 4.2 Portal development -Viewing services 4.3 Portal operation 4.4 Upgrading of the portal 5 Analysis and evaluation 5.1 Analysis of the lessons learned 5.2 Recommendations Second six-monthly progress meeting, 25 May 2010 Project timetable – planning diagram Test and monitor

  48. Second six-monthly progress meeting, 25 May 2010 Project timetable • First year dedicated to set up the system components (regional pools, SDN vocabs for chemical parameters mapping, portal core services – CDI, discovery, viewing) Now: • Continuing with data population and products generation • Increase portal functionalities (viewing and harmonisation) • Finalise QC/QA and ask expert opinions (ICES support) • Finalise products validation based on feedback from experts and potential users

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