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GMOD: System Architecture & Integration

GMOD: System Architecture & Integration. May 2003 Lincoln Stein, CSHL. Issues. User installation & integration Documentation Directory structure Configuration files Developer extensibility & maintainability How do the modules interact?. User installation & integration. Packaging

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GMOD: System Architecture & Integration

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  1. GMOD: System Architecture & Integration May 2003 Lincoln Stein, CSHL

  2. Issues • User installation & integration • Documentation • Directory structure • Configuration files • Developer extensibility & maintainability • How do the modules interact?

  3. User installation & integration • Packaging • Dependencies, updates, versions • README & HOWTO files • Site-specific vs common configuration • Predictable directory structure • User support: • Bug tracking & feature requests

  4. ? ? How do the Modules Interact? ? Query ? ? ? Edit ? ? Curate Visualize

  5. Fully Integrated MOD Application

  6. Vertical Toolkit Genome Module Stock Center Module Literature Module

  7. Federated Toolkit Curate Edit Visualize Query Literature Db Stock Center Db Genome Db

  8. How do we Federate?URL Link Integration URL Space http://mydb/lit.cgi http://mydb/stock.cgi http://mydb/genome.cgi Genome Module Stock Center Module Literature Module

  9. How do we Federate?Common Data Model & API Edit Curate Visualize Query Common Schema/API

  10. How do we Federate?Adaptors Edit Curate Visualize Query Red Adaptor Tan Adaptor

  11. How do we Federate?Xchange Format Edit Curate Visualize Query BeigeML

  12. How do we Federate?Service Architecture Edit Curate Visualize Query Get Beige Service Put Beige Service

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