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Adaptor sequence primer : 5’- GCG AGC ACA GAA TTA ATA CGA CT -3’ ORF C68 and ctRNA1

Table 1. Oligonucleotides used in RT-adaptor PCR and primer extension experiments. Adaptor sequence primer : 5’- GCG AGC ACA GAA TTA ATA CGA CT -3’ ORF C68 and ctRNA1 ORF C68 5´-ATG AGA CCA GGC ATA CGC AAA CTA GTG-3´

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Adaptor sequence primer : 5’- GCG AGC ACA GAA TTA ATA CGA CT -3’ ORF C68 and ctRNA1

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  1. Table 1. Oligonucleotides used in RT-adaptor PCR and primer extension experiments Adaptor sequence primer: 5’-GCG AGC ACA GAA TTA ATA CGA CT -3’ ORFC68 and ctRNA1 ORFC68 5´-ATG AGA CCA GGC ATA CGC AAA CTA GTG-3´ ORFC68ter15- GCGAGCACAGAATTAATACGACTTATCAAAAAAACACGTAACTTAAATTT -3´ ORFC68ter25´-GCGAGCACAGAATTAATACGACTTTATATTATATACGGGTCTAGTTTTT-3´ ORFC68ter35´-GCGAGCACAGAATTAATACGACTCCTTCTTTCCCTTTCTGTTTTCTTA -3´ ORFC68ter45´-GCGAGCACAGAATTAATACGACTGTGACTTTTCTTACACTTCTCT-3´ ORFc68ter55´-GCGAGCACAGAATTAATACGACTACGTAAGCGAAAGCCTGAAATAACGGAAAAAT -3´ ORF76 Up76-5’-GTCAAACGTTAGAGGAGTTAGAAGAG-3’ ORF76-end-5´-GCGAGCACAGAATTAATACGACTCTAGTCGGCTAATTCATCTCTATG-3´ ORF76/154-5´-GCGAGCACAGAATTAATACGACTCTCACGTCTCAACTCTTCTATATCA-3´ ctRNA3 ctRNA3up 5’- AAGATATAGTAAGAAGAATTGGTAAT-3’ ctRNA3dw1- 5’-GCGAGCACAGAATTAATACGACTCAGCTAATC CTAATCCGTTTGAGTAAT -3’ ctRNA3dw2- 5’-GCGAGCACAGAATTAATACGACTGCGAAAGATATTTAACATTCTGTTA ORF892 MDORF892- 5´-GACTTGCATAATGAATTAACA AAG AAC ATA GCT AC-3´ ORF892end-5´-GCGAGCACAGAATTAATACGACTTTACCCGGCTAATATTCTGAATTGA-3´ ORF892ter1-5´-GCGAGCACAGAATTAATACGACTTAATTACAGATGAAAAATTGAATTTCAAAAAAT –3´ ORF892ter2-5´-GCGAGCACAGAATTAATACGACTATTAAAAGAAAAAAAATCCGGATTTCGGTG-3´ ORF892ter3-5´-GCGAGCACAGAATTAATACGACTGCTATTTTTACCCCTATACACACATGC -3´ ORF288 and Tn ORF288LF- 5’-GAATTAGTGG GGAAACCAAC AAC-3’ ORF288end-5´-GCGAGCACAGAATTAATACGACTTTATTTCAGGCTTTCGCTTACGTTA-3´ ORF288ter15´-GCGAGCACAGAATTAATACGACTAGTCACGTGCCTCTTTATTCTTATTT-3´ ORF288ter25´-GCGAGCACAGAATTAATACGACTAGAAGGGCGTAAAATAACGGGTAAGA-3´ ORF288ter35´-GCGAGCACAGAATTAATACGACTTAAAAAACTAGACCCGTATATAATATAATAAGA-3´ ORF288ter4 5´-GCGAGCACAGAATTAATACGACTATGGGGATATTGTGTTATCGTATAAGAGGG -3´ ORF288ter55-GCGAGCACAGAATTAATACGACTATGAGACCAGGCATACGCAAACTAGTG-3´ ORF288ter6-5´-GCGAGCACAGAATTAATACGACTGGGTATTACCCCGTGGCTTTTCGTATG-3´ ORF288ter7-5´-GCGAGCACAGAATTAATACGACTTTTTGTCACCAGGTACAGTATAGT -3´ ctRNA2 ctRNA2 5´-ATGTGCGGAAGAGACTAGAGTGACATC-3’ ctRmRNA1- 5´-GCGAGCACAGAATTAATACGACTCTTTCTGTACATATGACAAACATATCA-3´ ctRmRNA2- 5´-GCGAGCACAGAATTAATACGACTGGAGGCGAACCAGGTGTCTAAT-3´ ORF91 MidwnORF91 5’-CAAACATATCAAACACGCTTCTCATAAAAATGC-3’ ORF91a 5´-GCGAGCACAGAATTAATACGACTCTTCTCTGATCTCACTGTAGATCCT-3´ ORF91b 5´-GCGAGCACAGAATTAATACGACTCATGATCTCGCCACCCTCAAGACCTTGA-3´ ctRNA3prext 5’- GACTTCACCAGAGAGGCGTGATTTATCGT-3’ RNA4prext5’- AAAAAAACTAGACCCGTATATAATATAATAAG-3’

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