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TGAC Browser A new open-source client-side rendering genomic browse

TGAC Browser A new open-source client-side rendering genomic browse. www.tgac-browser.tgac.ac.uk. Controls. Move left(1bp). Move right at a large scale. choose track(s) to display. Move right(1bp). Refresh. Move left at a large scale. Search box. export json file.

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TGAC Browser A new open-source client-side rendering genomic browse

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  1. TGAC Browser A new open-source client-side rendering genomic browse www.tgac-browser.tgac.ac.uk

  2. Controls Move left(1bp) Move right at a large scale choose track(s) to display Move right(1bp) Refresh Move left at a large scale Search box export json file select entire scaffold zoom in at a small scale start and end of scaffold zoom out at a small scale zoom in at a large scale to save current session zoom out at a large scale Figure 1: Labels showing various buttons on the Browser www.tgac-browser.tgac.ac.uk

  3. Choose the tracks to display www.tgac-browser.tgac.ac.uk

  4. Track/Settings: to select and display the track(s) www.tgac-browser.tgac.ac.uk

  5. Merge two tracks www.tgac-browser.tgac.ac.uk

  6. Merged tracks www.tgac-browser.tgac.ac.uk

  7. Select a region to dump the fasta sequence www.tgac-browser.tgac.ac.uk

  8. Select/download the fasta sequence of selected region www.tgac-browser.tgac.ac.uk

  9. Zoom into a gene www.tgac-browser.tgac.ac.uk

  10. Edit the gene label www.tgac-browser.tgac.ac.uk

  11. Delete a track www.tgac-browser.tgac.ac.uk

  12. Flagging a gene www.tgac-browser.tgac.ac.uk

  13. Flagged gene www.tgac-browser.tgac.ac.uk

  14. Save current session www.tgac-browser.tgac.ac.uk

  15. Load an already saved session www.tgac-browser.tgac.ac.uk

  16. Export the current session www.tgac-browser.tgac.ac.uk

  17. Exported session as a json file, which can later be loaded www.tgac-browser.tgac.ac.uk

  18. To retrieve cDNA/peptide seq www.tgac-browser.tgac.ac.uk

  19. To retrieve protein domains predicted by InterProScan www.tgac-browser.tgac.ac.uk

  20. Submitting a BLAST query www.tgac-browser.tgac.ac.uk

  21. BLAST result in the BLAST track www.tgac-browser.tgac.ac.uk

  22. BLAST result as per the alignment scores www.tgac-browser.tgac.ac.uk

  23. Thanks Contact Details: • Anil Thanki Anil.Thanki@tgac.ac.uk • Xingdong Bian Xingdong.Bian@tgac.ac.uk • Robert Davey Robert.Davey@tgac.ac.uk • Mario Caccamo Mario.Caccamo@tgac.ac.uk www.tgac-browser.tgac.ac.uk

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