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Data structure: Lookup Table Application: BLAST

Data structure: Lookup Table Application: BLAST . The Look-up Table Data Structure. Definitions:. A k-mer is a string of length k. A lookup table is a table of size | ? | k that stores the location of all k-mers in the input sequence(s). 1 2 3 4 5 6 7 8. ? ={A,C,G,T} k = 2

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C seeds lookup - PowerPoint PPT Presentation

Data structure: Lookup Table Application: BLAST