'Common subsequence' diaporamas de présentation

Topic 1 Outline

Searching for Similarity in Sequences Gary Benson Departments of Computer Science and Biology Boston University. Topic 1 Outline. Similarity and Alignment Define homology, similarity by descent and similarity by convergence Common mutations and their mathematical models Alignments

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Algorithms

Algorithms. Ch. 15: Dynamic Programming Ming-Te Chi. Dynamic programming is typically applied to optimization problems. In such problem there can be many solutions . Each solution has a value, and we wish to find a solution with the optimal value.

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Introduction to Algorithms

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?? : Dynamic Programming (II)

?? : Dynamic Programming (II). ???? Longest Common Subsequence Longest Increasing Subsequence Matrix-chain Multiplication Optimal Polygon Triangulation ???? : H.89.4 ????. a. b. c. b. d. a. b. Longest Common Subsequence.

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Linear-Space Alignment

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Linear-Space Alignment

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Real-world protein aligners

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UMass Lowell Computer Science 91.503 Analysis of Algorithms Prof. Giampiero Pecelli Fall, 2010

UMass Lowell Computer Science 91.503 Analysis of Algorithms Prof. Giampiero Pecelli Fall, 2010. Paradigms for Optimization Problems Dynamic Programming & Greedy Algorithms. Optimization.

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Dynamic programming algorithms for all-pairs shortest path and longest common subsequences

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Dynamic Programming Chapter 15 Highlights

Dynamic Programming Chapter 15 Highlights. Charles Tappert Seidenberg School of CSIS, Pace University. What is dynamic programming?. Dynamic programming is a method of solving optimization problems by combining the solutions of subproblems Developing these algorithms follows four steps:

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Application of the A * Algorithm to Solve the Longest Common Subsequence from Fragments Problem

Application of the A * Algorithm to Solve the Longest Common Subsequence from Fragments Problem. Created by ? Chiu-Ting Tseng Date ? Oct. 6, 2005. Abstract.

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15. Dynamic Programming

15. Dynamic Programming. Heejin Park College of Information and Communications Hanyang University. Contents. Introduction Assembly-line scheduling Matrix-chain multiplication Elements of dynamic programming Longest common subsequence. Longest common subsequence. Definition Character

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Subsequence

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Longest Common Subsequence (LCS)

Longest Common Subsequence (LCS) . Problem : Given sequences x[1..m] and y[1..n], find a longest common subsequence of both. Example : x=ABC BDAB and y= BD C AB A, BCA is a common subsequence and BCBA and BDAB are two LCSs. LCS. Brute force solution Writing a recurrence equation

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Dynamic Programming (Longest Common Subsequence)

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Software Trajectory Analysis: an empirically based method for automated software process discovery

Software Trajectory Analysis: an empirically based method for automated software process discovery. Pavel Senin Collaborative Software Development Laboratory Department of Information and Computer Sciences University of Hawaii senin@hawaii.edu

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Experimenting an approximation algorithm for the LCS

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Chapter 15: Dynamic Programming

Chapter 15: Dynamic Programming. Matrix-chain multiplication. Compute the product of n matrices A1,A2,..,An Where to put the parentheses (A1( A2 (A3 A4))) (A1(( A2 A3) A4)) ((A1 A2) (A3 A4)) ((A1 (A2 A3)) A4) (((A1 A2) A3) A4) P(n) - How many parenthesizations ? 1 if n=1

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Longest common subsequence (LCS) Problem

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