'Dynamic programming algorithms' diaporamas de présentation

Probabilistic Sequence Alignment

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Haidong Xue Summer 2012, at GSU

Design and Analysis of Algorithms Intro to dynamic programming; matrix chain multiplication; longest common subsequence. Haidong Xue Summer 2012, at GSU. When is divide-and-conquer inefficient?. In divide-and-conquer, a solution is combined from solutions of subproblems Mergesort

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Approximate String Matching

Approximate String Matching. A Guided Tour to Approximate String Matching Gonzalo Navarro Justin Wiseman. Outline:. Definition of approximate string matching (ASM) Applications of ASM Algorithms Conclusion . Approximate string matching.

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CPSC 320: Intermediate Algorithm Design and Analysis

CPSC 320: Intermediate Algorithm Design and Analysis. July 2, 2014. Instructor and Course Structure. Instructor. Jonatan Schroeder jonatan@cs.ubc.ca Office: ICICS/CS 247 Office hours: Mon/Wed/Fri: 12-1pm Or by appointment. Teaching Assistants. Alireza Shafaei Anupam Srivastava

599 views • 39 slides

Bioinformatics Methods for Inheriting Structural and Functional annotations for Gene Sequences

Bioinformatics Methods for Inheriting Structural and Functional annotations for Gene Sequences. if a related sequence has a known function can you inherit functional properties if a related sequence has a known structure, can you model the unknown structure using the known?

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9/10: Indexing & Tolerant Dictionaries

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Sequence Alignment and Approaches to Database Searching

Sequence Alignment and Approaches to Database Searching. Jessica Kissinger 2001. Why do we align sequences?. To discover functional, structural and evolutionary similarities

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distributed computing & map reduce

distributed computing & map reduce. CS16: Introduction to Data Structures & Algorithms. Distributed Computing Overview MapReduce Application: Word Count Application: Mutual Friends. Outline.

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Joint Parsing and Alignment with Weakly Synchronized Grammars

Joint Parsing and Alignment with Weakly Synchronized Grammars. David Burkett, John Blitzer, & Dan Klein. TexPoint fonts used in EMF. Read the TexPoint manual before you delete this box.: A A A A A A A A A. Statistical MT Training Pipeline. }. 1) Align sentence pairs (GIZA++)

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Bioinformatics and Molecular evolution Paul G. Higgs and Teresa K. Attwood

Bioinformatics and Molecular evolution Paul G. Higgs and Teresa K. Attwood Chapter 6. Sequence alignment algorithms. Jeong Da Geum. Chapter 6. Sequence alignment algorithms. Chapter preview ? Dynamic programming algorithms gap cost functions global and local alignments

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Algorithm Strategies

Algorithm Strategies. Fawzi Emad Chau-Wen Tseng Department of Computer Science University of Maryland, College Park. General Concepts. Algorithm strategy Approach to solving a problem May combine several approaches Algorithm structure Iterative ? execute action in loop

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Interactive tools and programming environments for sequence analysis

Interactive tools and programming environments for sequence analysis .

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Greedy Algorithms

Greedy Algorithms. Announcements. Exam #1 See me for 2 extra points if you got #2(a) wrong. Lab Attendance 12 Labs, so if anyone needs to miss a lab you are covered since the lab attendance is out of 10. Assignment #3 is posted due 10/20/2010 Exam #2 on 10/27/2010.

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Fundamentals of Algorithms MCS - 2 Lecture # 7

Fundamentals of Algorithms MCS - 2 Lecture # 7. Types of Algorithms. Algorithms Classification. Algorithms that use a similar problem-solving approach can be grouped together Simple recursive algorithms Backtracking algorithms Divide and conquer algorithms

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A Graphical Approach for Solving Single Machine Scheduling Problems Approximately

A Graphical Approach for Solving Single Machine Scheduling Problems Approximately. Institute of Control Sciences of the Russian Academy of Sciences. Evgeny R. Gafarov Alexandre Dolgui Alexander A. Lazarev Frank Werner. Ecole Nationale Superieure des Mines.

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Dependency Parsing

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Hidden Markov Models

Hidden Markov Models. Pairwise Alignments. Hidden Markov Models. Finite state automata with multiple states as a convenient description of complex dynamic programming algorithms for pairwise alignment

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Dynamic Programming and the Knapsack Problem

Dynamic Programming and the Knapsack Problem. Paul Dohmen Roshnika Fernando. What is Dynamic Programming. Dynamic programming is a method of solving complex problems by breaking them down into sub-problems that can be solved by working backwards from the last stage.

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Dynamic Programming and the Knapsack Problem

Dynamic Programming and the Knapsack Problem. Paul Dohmen Roshnika Fernando. What is Dynamic Programming. Dynamic programming is a method of solving complex problems by breaking them down into sub-problems that can be solved by working backwards from the last stage.

502 views • 12 slides

CS 155, Programming Paradigms Fall 2014, SJSU design techniques

CS 155, Programming Paradigms Fall 2014, SJSU design techniques. Jeff Smith. Algorithm design techniques. Several classes of algorithms exist, based on that technique used for their design divide-and-conquer algorithms dynamic programming algorithms greedy algorithms

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