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Sequence Similarity Searches

Sequence Similarity Searches

Sequence Similarity Searches. Subtitle. Three key questions. Query? Purpose? Database?. BLAST. >gi|77630012|ref|ZP_00792598.1| COG0442: Prolyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758] Length=572 Score = 1013 bits (2619), Expect = 0.0, Method: Composition-based stats.

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509 views • 30 slides
Verification of Safety Critical Software

Verification of Safety Critical Software

Verification of Safety Critical Software. Nick Tudor tel: +44 1684 894489 email: njtudor@qinetiq.com. The Agenda. The NDI Control Law A Path Finding Experiment Benefits Resistance Questions. The NDI Control Law. Control software. Example of successful application.

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313 views • 22 slides
Introductory Sequence Analysis

Introductory Sequence Analysis

Introductory Sequence Analysis. Lisa Mullan, HGMP-RC, UK. Good overview. Dotplots. window size = 10. CCCCCCTGTG. A dot is placed at the point where there is an exact match between nucleotide residues. TGTCCCCCCTGTG. TAGTGTCCCC. AGTGTCCCCC. AGTAGTGTCCCCCCTAGGCGCCATTGACTAAGGAACTGAG.

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273 views • 18 slides
Introductory Sequence Analysis

Introductory Sequence Analysis

Introductory Sequence Analysis. Lisa Mullan, HGMP-RC, UK. Good overview. Dotplots. window size = 10. CCCCCCTGTG. A dot is placed at the point where there is an exact match between nucleotide residues. TGTCCCCCCTGTG. TAGTGTCCCC. AGTGTCCCCC. AGTAGTGTCCCCCCTAGGCGCCATTGACTAAGGAACTGAG.

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263 views • 18 slides
Pair HMM and the Stepping Stone algorithm

Pair HMM and the Stepping Stone algorithm

Pair HMM and the Stepping Stone algorithm. Mani Right Now. Our Pair HMM state diagram. Viterbi algorithm. Time complexity O( mns 2 ), Space complexity O( mns ) m – length of genomic sequence n – length of cDNA sequence s – number of states (~13 now)

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351 views • 14 slides
Background Reduction in Cryogenic Detectors

Background Reduction in Cryogenic Detectors

Background Reduction in Cryogenic Detectors. ?. ?. x. Rock. Rock. U/Th/K/Rn. ????? ,n. n. Dan Bauer, Fermilab LRT2004, Sudbury, December 13, 2004. Detector. U/Th/K/Rn. Shielding. Veto. Cryogenic Dark Matter Search - CDMS. Dark Matter Search

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253 views • 13 slides

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