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Why do we want to align protein sequences?

Why do we want to align protein sequences?

Protein Sequence Comparison Patrice Koehl http://koehllab.genomecenter.ucdavis.edu/teaching/ecs129/06/lecture-notes. Why do we want to align protein sequences?. If two sequences align well, the corresponding proteins are homologous; they probably share the same structure and/or function

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694 views • 50 slides
Comp. Genomics

Comp. Genomics

Comp. Genomics. Recitation 14 Exam preparation Biological networks. Exercise. A large PPI network G was generated using high throughput technologies. A smaller network H is known in a different organism.

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522 views • 43 slides
CMSC 150 recursion

CMSC 150 recursion

CMSC 150 recursion. CS 150: Mon 26 Mar 2012. Motivation : Bioinformatics Example. A G A C T A G T T A C C G A G A C G T Want to compare sequences for similarity Similar sequences: common ancestors? Point mutations Insertions Deletions. ? ? A G A C T A G T T A C

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359 views • 27 slides
Bioinformatics 01 Part 3: Pairwise Alignments and Database Searches

Bioinformatics 01 Part 3: Pairwise Alignments and Database Searches

Bioinformatics 01 Part 3: Pairwise Alignments and Database Searches. Similarity and homology Gap penalties and scoring matrices in pairwise alignments Alignment algorithms Database searching: BLAST and FASTA. Similarity and Homology.

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335 views • 18 slides
Sequence allignement 1

Sequence allignement 1

Sequence allignement 1. Chitta Baral. Sequences and Sequence allignment. Two main kind of sequences Sequence of base pairs in DNA molecules (A+T+C+G)* Sequence of aminoacids in a protein molecule A(C+D+E+F+G+H+I+K+L+M+N+P+Q+R+S+T+V+W+X+Y )*Z Two main kind of sequence allignment

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196 views • 9 slides

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