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Finding Regulatory Motifs in DNA Sequences

Finding Regulatory Motifs in DNA Sequences

Finding Regulatory Motifs in DNA Sequences. Outline. Implanting Patterns in Random Text Gene Regulation Regulatory Motifs The Gold Bug Problem The Motif Finding Problem Brute Force Motif Finding The Median String Problem Search Trees Branch-and-Bound Motif Search

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1.39k views • 119 slides
CSE 5290: Algorithms for Bioinformatics Fall 2009

CSE 5290: Algorithms for Bioinformatics Fall 2009

CSE 5290: Algorithms for Bioinformatics Fall 2009. Suprakash D at ta datta@cs.yorku.ca Office: CSEB 3043 Phone: 416-736-2100 ext 77875 Course page: http://www.cs.yorku.ca/course/5290. Last time. DNA Mapping and Brute Force Algorithms Next: Finding Regulatory Motifs in DNA sequences.

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804 views • 80 slides
Introduction to

Introduction to

Introduction to. Bioinformatics. Introduction to Bioinformatics. LECTURE 10: Identification of regulatory sequences * Chapter 10: A bed-time story. Introduction to Bioinformatics LECTURE 10: IDENTIFICATION OF REGULATORY SEQUENCES. 10.1 The circadian clock

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707 views • 60 slides
Introduction to

Introduction to

Introduction to. Bioinformatics. Introduction to Bioinformatics. LECTURE 10: Identification of regulatory sequences * Chapter 10: A bed-time story. Introduction to Bioinformatics LECTURE 10: IDENTIFICATION OF REGULATORY SEQUENCES. 10.1 The circadian clock

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720 views • 60 slides
Introduction to

Introduction to

Introduction to. Bioinformatics. Introduction to Bioinformatics. LECTURE 10: Identification of regulatory sequences * Chapter 10: A bed-time story. Introduction to Bioinformatics LECTURE 10: IDENTIFICATION OF REGULATORY SEQUENCES. 10.1 The circadian clock

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610 views • 60 slides
Finding Regulatory Motifs in DNA Sequences

Finding Regulatory Motifs in DNA Sequences

Finding Regulatory Motifs in DNA Sequences. Combinatorial Gene Regulation. A microarray experiment showed that when gene X is knocked out, 20 other genes are not expressed How can one gene have such drastic effects?. Regulatory Proteins.

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431 views • 27 slides

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