'Keyword trees' diaporamas de présentation

Combinatorial Pattern Matching

Combinatorial Pattern Matching. Outline. Week 08: Quiz 2 Hash Tables Repeat Finding Exact Pattern Matching Keyword Trees Suffix Trees Week 09: Heuristic Similarity Search Algorithms Approximate String Matching Filtration Comparing a Sequence Against a Database Algorithm behind BLAST

1.21k views • 102 slides

Combinatorial Pattern Matching

Combinatorial Pattern Matching. Outline. Hash Tables Repeat Finding Exact Pattern Matching Keyword Trees Suffix Trees Heuristic Similarity Search Algorithms Approximate String Matching Filtration Comparing a Sequence Against a Database Algorithm behind BLAST Statistics behind BLAST

1.31k views • 102 slides

Combinatorial Pattern Matching

Combinatorial Pattern Matching. Outline. Hash Tables Repeat Finding Exact Pattern Matching Keyword Trees Suffix Trees Heuristic Similarity Search Algorithms Approximate String Matching Filtration Comparing a Sequence Against a Database Algorithm behind BLAST Statistics behind BLAST

1.23k views • 100 slides

CSE 5290: Algorithms for Bioinformatics Fall 2009

CSE 5290: Algorithms for Bioinformatics Fall 2009. Suprakash D at ta datta@cs.yorku.ca Office: CSEB 3043 Phone: 416-736-2100 ext 77875 Course page: http://www.cs.yorku.ca/course/5290. Next. Pattern matching Some of the following slides are based on slides by the authors of our text.

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Lecture 16: Combinatorial Pattern Matching

697 views • 53 slides

Suffix Trees

Suffix Trees. Specialized form of keyword trees New ideas preprocess text T, not pattern P O(m) preprocess time O(n+k) search time k is number of occurrences of P in T edges can have string labels. p. t. o. o. e. p. o. t. e. o. 4. 1. 2. 3. Keyword Tree.

218 views • 10 slides