'Read pairs' diaporamas de présentation

Genome Assembly: a brief introduction

593 views • 35 slides

ILP-based maximum likelihood genome scaffolding

ILP-based maximum likelihood genome scaffolding. James Lindsay Ion Mandoiu University of Connecticut Hamed Salooti Alex Zelikovsky Georgia State University. De-novo Assembly. Genome. Reads. S equencing. Assembly. Scaffolds. S caffolding. Contigs. Why Scaffolding?. Annotation

423 views • 31 slides

Phusion2 and The Genome Assembly of Tasmanian Devil

Phusion2 and The Genome Assembly of Tasmanian Devil. Zemin Ning The Wellcome Trust Sanger Institute. Outline of the Talk:. Challenges in genome assemblies from pure Illumina reads The Phusion2 pipeline The Tasmanian devil genome project The Devil genome assembly

628 views • 28 slides

The Past, Present, and Future of DNA Sequencing

The Past, Present, and Future of DNA Sequencing . Craig A. Praul Co- Director Genomics Core Facility Huck Institutes of the Life Sciences Penn State University. A very short history of DNA sequencing.

407 views • 25 slides

De Novo S hort R ead A ssembly

De Novo S hort R ead A ssembly. Li, Zhe 2011-06-20. Shotgun sequencing and assembly. Original DNA is broken into a collection of segments. The ends of each sequence are sequenced. The sequence reads are assembled together based on sequence similarity.

292 views • 18 slides

1000 Genomes Project Phase III Tutorial Structural Variants (SVs ) Eugene J. Gardner

1000 Genomes Project Phase III Tutorial Structural Variants (SVs ) Eugene J. Gardner University of Maryland Institute for Genome Sciences Baltimore, MD On Behalf of the 1000 Genomes Structural Variation Analysis Group. MT Insertion. SV Discovery Over the Three P hases of the 1000 Genomes.

865 views • 12 slides

Assembly of scaffolds of P. knowlesi chromosomes for genomic comparison with P. falciparum 3D7

3D7 chrA as reference. Ordered contigs. A. Ordered contigs. B. 3D7 chrB as reference. 3. 2. 1. 7. 5. 4. P. knowlesi. P. falciparum chr7. Assembly of scaffolds of P. knowlesi chromosomes for genomic comparison with P. falciparum 3D7.

81 views • 1 slides