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High throughput expression analysis using RNA sequencing ( RNAseq )

High throughput expression analysis using RNA sequencing ( RNAseq )

High throughput expression analysis using RNA sequencing ( RNAseq ). June 18, 2019. Lecture objectives. Theory and practice of RNA sequencing (RNA- seq ) analysis Rationale for sequencing RNA Challenges specific to RNA- seq Types of libraries for RNA- seq Sequencing coverage (depth)

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1.15k views • 41 slides
Canadian Bioinformatics Workshops

Canadian Bioinformatics Workshops

Canadian Bioinformatics Workshops. www.bioinformatics.ca. Module #: Title of Module. 2. RNA- S eq Module 2 Alignment and Visualization ( lecture). Malachi Griffith, Obi Griffith, Fouad Yousif Informatics for RNA-seq Analysis June 16 - 17, 2016. Learning objectives of the course.

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572 views • 40 slides
RNA- seq Analysis in Galaxy

RNA- seq Analysis in Galaxy

RNA- seq Analysis in Galaxy. Pawel Michalak (pawel@vbi.vt.edu). Discovery find new transcripts find transcript boundaries find splice junctions Comparison Given samples from different experimental conditions, find effects of the treatment on gene expression strengths

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731 views • 36 slides
RNA- seq Analysis in Galaxy

RNA- seq Analysis in Galaxy

RNA- seq Analysis in Galaxy. Pawel Michalak (pawel@vbi.vt.edu). Discovery find new transcripts find transcript boundaries find splice junctions Comparison Given samples from different experimental conditions, find effects of the treatment on gene expression strengths

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434 views • 36 slides
Canadian Bioinformatics Workshops

Canadian Bioinformatics Workshops

Canadian Bioinformatics Workshops. www.bioinformatics.ca. Module #: Title of Module. 2. Module 0 Introduction to cloud computing (slides modified with permission from Francis Ouellette). Malachi Griffith & Obi Griffith Informatics for RNA-seq Analysis June 8-9, 2015.

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295 views • 29 slides
A Bioinformatics Pipeline to Explore Transcriptional Regulation in Plants

A Bioinformatics Pipeline to Explore Transcriptional Regulation in Plants

A Bioinformatics Pipeline to Explore Transcriptional Regulation in Plants. By Amy Marshall-Colon (University of Illinois Urbana-Champaign), Mary Williams (ASPB), and Kranthi Varala (Purdue University). Differential expression analysis: Tools and techniques, outcomes. Microarray. Gene Network.

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445 views • 24 slides
RNA Seq: Modern tool for transcriptome analysis and gene expression in eukaryotes

RNA Seq: Modern tool for transcriptome analysis and gene expression in eukaryotes

RNA sequencing, also called whole transcriptome shotgun sequencing, uses next-generation sequencing (NGS) to reveal the presence and quantity of RNA in a biological sample. Read more

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34 views • 3 slides

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