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FreeSurfer surfer.nmr.mgh.harvard Register Download Platforms: Linux, Mac, Windows VM

FreeSurfer surfer.nmr.mgh.harvard Register Download Platforms: Linux, Mac, Windows VM

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1.01k views • 76 slides
Introduction to FreeSurfer surfer.nmr.mgh.harvard

Introduction to FreeSurfer surfer.nmr.mgh.harvard

Introduction to FreeSurfer http://surfer.nmr.mgh.harvard.edu. Allison Stevens Bruce Fischl, Doug Greve, Nick Schmansky, Jenni Pacheco freesurfer@nmr.mgh.harvard.edu. Cortical Surface Reconstruction. FreeSurfer creates computerized models of the brain from MRI data. Input:

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1.54k views • 74 slides
FreeSurfer : Troubleshooting surfer.nmr.mgh.harvard

FreeSurfer : Troubleshooting surfer.nmr.mgh.harvard

FreeSurfer : Troubleshooting surfer.nmr.mgh.harvard.edu. Categories of Errors. Hard failures = recon-all quits before it finishes Soft failures = recon-all finishes but results need modification. Types of Soft Failures. Skull Strip Errors Segmentation Errors

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495 views • 48 slides
FreeSurfer : Troubleshooting surfer.nmr.mgh.harvard

FreeSurfer : Troubleshooting surfer.nmr.mgh.harvard

FreeSurfer : Troubleshooting surfer.nmr.mgh.harvard.edu. Hard and Soft Failures. Categories of errors: Hard & Soft Failures Hard = recon-all quits before it finishes Soft = recon-all finishes but results need modification (i.e. surface or segmentation inaccuracy)

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484 views • 47 slides
FreeSurfer : Troubleshooting surfer.nmr.mgh.harvard

FreeSurfer : Troubleshooting surfer.nmr.mgh.harvard

FreeSurfer : Troubleshooting surfer.nmr.mgh.harvard.edu. Hard and Soft Failures. Categories of errors: Hard & Soft Failures Hard = recon-all quits before it finishes Soft = recon-all finishes but results need modification (i.e. surface or segmentation inaccuracy)

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479 views • 47 slides
FreeSurfer : Troubleshooting surfer.nmr.mgh.harvard

FreeSurfer : Troubleshooting surfer.nmr.mgh.harvard

FreeSurfer : Troubleshooting surfer.nmr.mgh.harvard.edu. Hard and Soft Failures. Categories of errors: Hard & Soft Failures Hard = recon-all quits before it finishes Soft = recon-all finishes but results need modification (i.e. surface or segmentation inaccuracy)

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531 views • 47 slides
FreeSurfer : Troubleshooting surfer.nmr.mgh.harvard

FreeSurfer : Troubleshooting surfer.nmr.mgh.harvard

FreeSurfer : Troubleshooting surfer.nmr.mgh.harvard.edu. Troubleshooting. Hard and Soft Failures Skull Strip Errors Segmentation Errors. Intensity Normalization. Pial Surface misplacement. Topological Defect. Hard and Soft Failures. Hard = recon-all quits before it finishes

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386 views • 38 slides

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