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Introduction to FreeSurfer surfer.nmr.mgh.harvard

Introduction to FreeSurfer surfer.nmr.mgh.harvard

Introduction to FreeSurfer http://surfer.nmr.mgh.harvard.edu. Allison Stevens Bruce Fischl, Doug Greve, Nick Schmansky, Jenni Pacheco freesurfer@nmr.mgh.harvard.edu. Cortical Surface Reconstruction. FreeSurfer creates computerized models of the brain from MRI data. Input:

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1.54k views • 74 slides
Anatomical Analysis with FreeSurfer surfer.nmr.mgh.harvard

Anatomical Analysis with FreeSurfer surfer.nmr.mgh.harvard

Anatomical Analysis with FreeSurfer surfer.nmr.mgh.harvard.edu. 1. Processing Stream Overview. Intensity Normalization. Gyral Labeling. Skull Stripping. Surface Atlas Registration. T1 Weighted Input. Volumetric Labeling. White Matter Segmentation. Surface Extraction. 2.

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758 views • 60 slides
Anatomical Analysis with FreeSurfer surfer.nmr.mgh.harvard

Anatomical Analysis with FreeSurfer surfer.nmr.mgh.harvard

Anatomical Analysis with FreeSurfer surfer.nmr.mgh.harvard.edu. 1. Processing Stream Overview. Intensity Normalization. Gyral Labeling. Skull Stripping. Surface Atlas Registration. T1 Weighted Input. Volumetric Labeling. White Matter Segmentation. Surface Extraction. 2.

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890 views • 59 slides
Anatomical Analysis with FreeSurfer surfer.nmr.mgh.harvard

Anatomical Analysis with FreeSurfer surfer.nmr.mgh.harvard

Anatomical Analysis with FreeSurfer surfer.nmr.mgh.harvard.edu. 1. Processing Stream Overview. Intensity Normalization. Gyral Labeling. Skull Stripping. Surface Atlas Registration. T1 Weighted Input. Volumetric Labeling. White Matter Segmentation. Surface Extraction. 2.

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1.01k views • 59 slides
Unix Tutorial for FreeSurfer Users

Unix Tutorial for FreeSurfer Users

Unix Tutorial for FreeSurfer Users. Allison Stevens. What is Unix/Linux?. An operating system (like Windows and OS X) Linux is the free, modifiable, and redistributable version of Unix Why use it?. What is Unix/Linux?. An operating system (like Windows and OS X)

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741 views • 53 slides
Unix Tutorial for FreeSurfer Users

Unix Tutorial for FreeSurfer Users

Unix Tutorial for FreeSurfer Users. Allison Stevens. What is Unix/Linux?. An operating system (like Windows and OS X) Linux is the free, modifiable, and redistributable version of Unix Why use it?. What is Unix/Linux?. An operating system (like Windows and OS X)

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731 views • 53 slides
Unix Tutorial for FreeSurfer Users

Unix Tutorial for FreeSurfer Users

Unix Tutorial for FreeSurfer Users. Ender Konukoglu. What is Unix/Linux?. An operating system (like Windows and OS X) Linux is the free, modifiable, and redistributable version of Unix Why use it?. What is Unix/Linux?. An operating system (like Windows and OS X)

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587 views • 47 slides
Processing Your Own Data

Processing Your Own Data

Processing Your Own Data. With FreeSurfer, certain variables must be set in order to use it correctly: FREESURFER_HOME SUBJECTS_DIR. tell Operating System where FreeSurfer is. tell FreeSurfer where data is. Required Variables. To use FreeSurfer you’ll have to do:.

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165 views • 5 slides
Processing Your Own Data

Processing Your Own Data

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57 views • 5 slides

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