1 / 12

A rapid visualization pipeline for the 2009 A/H1N1 influenza pandemic

A rapid visualization pipeline for the 2009 A/H1N1 influenza pandemic. Donovan Parks Norm MacDonald Rob Beiko. Outline. A little biology Motivation Data acquisition pipeline GenGIS : a genomic GIS framework Examples. Photo obtained from commons.wikimedia.org. 1/10. H1N1 Biology.

titus
Télécharger la présentation

A rapid visualization pipeline for the 2009 A/H1N1 influenza pandemic

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript


  1. A rapid visualization pipeline for the 2009 A/H1N1 influenza pandemic Donovan Parks Norm MacDonald Rob Beiko

  2. Outline • A little biology • Motivation • Data acquisition pipeline • GenGIS: a genomic GIS framework • Examples Photo obtained from commons.wikimedia.org 1/10

  3. H1N1 Biology Modified photo from commons.wikimedia.org 2/10

  4. Motivation • Move from reactive to preventive health strategy • Increased sampling requires automated tools 3/10

  5. Pipeline Overview 4/10

  6. Data Acquisition Pipeline 5/10

  7. SeqMonitor http://ratite.cs.dal.ca/SeqMonitor/ 6/10

  8. GenGIS: A Genomic GIS Framework 7/10

  9. Global Genetic Diversity of NA 8/10

  10. NA Polymorphism October 19, 2009 9/10

  11. Conclusions • Global, continuous sequencing of infectious diseases would allows us to implement preventive health strategies. • Automated tools will be necessary to provide analyses to inform such policies. 10/10

  12. Further Information • SeqMonitor: http://ratite.cs.dal.ca/SeqMonitor • MacDonald, N. J., Parks, D. H., and Beiko, R. G. SeqMonitor: Influenza Analysis Pipeline and Visualization. PLoS Currents: Influenza. 23 September 2009: RRN1040. • GenGIS: http://kiwi.cs.dal.ca/GenGIS • Parks, D. H., Porter, M., Churcher, S., Wang, S., Blouin, C., Whalley, J., Brooks, S., and Beiko, R. G. GenGIS: A geospatial information system for genomic data. Genome Res. July 27, 2009. • Parks, D. H., MacDonald, N. J., and Beiko, R. G. Tracking the evolution and geographic spread of influenza A. PLoS Currents: Influenza. 21 August 2009: RRN1014.

More Related