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GenSAS : Genome Sequence Annotation Server, a Tool for Online Annotation and Curation

GenSAS : Genome Sequence Annotation Server, a Tool for Online Annotation and Curation. Dorrie Main, Taein Lee, Ping Zheng , Sook Jung, Stephen P. Ficklin, Jodi Humann,  Jill Wegrzyn  and David Neale. What is GenSAS ? It is a web-based Gen ome S equence A nnotation S erver

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GenSAS : Genome Sequence Annotation Server, a Tool for Online Annotation and Curation

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  1. GenSAS: Genome Sequence Annotation Server, a Tool for Online Annotation and Curation Dorrie Main, Taein Lee, Ping Zheng, Sook Jung, Stephen P. Ficklin, Jodi Humann,  Jill Wegrzyn and David Neale

  2. What is GenSAS? • It is a web-based Genome Sequence Annotation Server • A one-stop website with a single graphical interface for running multiple structural and functional annotation tools • Enables the visualization and manual curation of genome sequences

  3. Easy sequence input and task creation User accounts allow for easy access to DNA sequences, tasks, and results Multiple annotation tools are available in GenSAS

  4. Sequences can be pasted or uploaded Sequences are saved in the user associated database and selected for analysis Customize the settings for each tool A customized task can be created by selecting from the list of tools

  5. Parameter windows allow user to adjust settings and use custom databases for each tool

  6. Tasks are given custom names and added added to the task queue • Multiple tasks can be added • Users are sent email notifications upon task execution and completion

  7. Graphical display of results for editing and manual curation Create a custom layer from data or import a layer of data Navigate by sliding the sequence or by position See the task settings and tools Zoom in and out Save the layer data and filter the results Name of analysis

  8. Zoom to see the sequence Save the custom layer in gff3 or Chado database format Add elements from other layers to custom layer

  9. Further Development of GenSAS • Add the ability to assign tasks to multiple sequences at once and run the same tool with different settings in the same task • Add more analysis tools and protein and transcript information to layer data • Enable users to add sub-accounts for group editing of annotations • Implement transfer of data to a Chado database and full integration with Tripal • Develop a virtual machine so users can install GenSAS as a stand-alone program

  10. Funding provided by

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