Bacterial Growth and Nutrition

1. Bacterial Growth and Nutrition • Bacterial nutrition and culture media • Chemical and physical factors affecting growth • The nature of bacterial growth • Methods for measuring population size http://diverge.hunter.cuny.edu/~weigang/Images/0611_binaryfission_1.jpg

2. Matter and energy • In order to grow, bacteria need a source of raw materials and energy • Source can be the same (e.g. glucose) or different (e.g. carbon dioxide and sunlight). • Living things can extract energy from matter • Living things can’t turn energy into matter • Living things can use energy to assemble raw materials. • Bacteria can’t grow on nothing!

3. Where do raw materials come from? • Bacteria acquire energy from oxidation of organic or inorganic molecules, or from sunlight. • Growth requires raw materials: some form of carbon. • Autotrophs vs. heterotrophs • Auto=self; hetero=other; troph=feeding. • Autotrophs use carbon dioxide • Heterotrophs use pre-formed organic compounds (molecules made by other living things). • Humans and medically important bacteria are heterotrophs.

4. Essentials of Bacterial nutrition • Macronutrients: needed in larger amounts • Needed in large quantities: CHONPS • Carbon, hydrogen, oxygen, nitrogen, phosphorous, and sulfur. H and O are common. Sources of C, N, P, and S must also be provided. • Macronutrients needed in smaller amounts: • Mineral salts such as Ca+2, Fe+3, Mg+2, K+ • Micronutrients = trace elements; • needed in very tiny amounts; e.g. Zn+2, Mo+2, Mn+2

5. http://textbookofbacteriology.net/nutgro.html

6. Chemical form must be appropriate • Not all bacteria can use the same things • Some molecules cannot be transported in • Enzymes for metabolizing it might not be present • Chemical may be used, but more expensive • These differences are used for identification • Some chemicals are inert or physically unusable • Relatively few bacteria (and only bacteria) use N2 • Diamonds, graphite are carbon, but unusable • P always in the form of phosphate

7. Make it, or eat it? • Some bacteria are remarkable, being able to make all the organic compounds needed from a single C source like glucose. • For others: • Vitamins, amino acids, blood, etc. added to a culture medium are called growth factors. • Bacteria that require a medium with various growth factors or other components and are hard to grow are referred to as fastidious.

8. Feast or famine: normal is what’s normal for you:Oligotrophs vs. copiotrophs • Oligo means few; oligotrophs are adapted to life in environments where nutrients are scarce • For example, rivers, other clean water systems. • Copio means abundant, as in “copious” • The more nutrients, the better. • Medically important bacteria are copiotrophs. • Grow rapidly and easily in the lab.

9. Culture Medium • Defined vs. Complex • Defined has known amounts of known chemicals. • Complex: hydrolysates, extracts, etc. • Exact chemical composition is not known. • Selective and differential • Selective media limits the growth of unwanted microbes or allows growth of desired ones. • Differential media enables “differentiation” between different microbes. • A medium can be both.

10. Defined Medium for Cytophagas/Flexibacters Componentgrams K2HPO4 0.10 KH2PO4 0.05 MgCl2 0.36 NaHCO3 0.05 {CaCl2 1 ml* {BaCl2.2H2O Na acetate 0.01 FeCl.7H2O 0.2 ml* RNA 0.10 alanine 0.15 arginine 0.20 aspartic acid 0.30 glutamic acid 0.55 glycine 0.02 histidine 0.20 isoleucine 0.30 leucine 0.20 lysine 0.40 phenylalanine 0.30 proline 0.50 serine 0.30 threonine 0.50 valine 0.30

11. Physical requirements for growth • Prefixes and suffixes: • Bacteria are highly diverse in the types of conditions they can grow in. • Optimal or required conditions implied by “-phile” meaning “love” • Some bacteria prefer other conditions, but can tolerate extremes • Suffix “-tolerant” • Note the difference! http://www.kodak.com/global/images/en/health/filmImaging/thermometer.gif

12. Oxygen: friend or foe? • Early atmosphere of Earth had none • First created by cyanobacteria using photosynthesis • Oxygen gas rusted iron in Earth’s crust, then excess collected in atmosphere • Strong oxidizing agent • Reacts with certain organic molecules, produces free radicals and strong oxidizers : • Singlet oxygen, H2O2(peroxide), O3- (superoxide), and hydroxyl (OH-) radical.

13. Protections of bacteria against oxygen • Bacteria possess protective enzymes, catalase and superoxide dismutase. • Catalase breaks down hydrogen peroxide into water and oxygen gas. • Superoxide dismutase breaks superoxide down into peroxide and oxygen gas. • Anaerobes missing one or both; slow or no growth in the presence of oxygen. Fe3+ -SOD + O2- → Fe2+ -SOD + O2 Fe2+ -SOD + O2- + 2H+ → Fe 3+ -SOD + H2O2

14. Relation to Oxygen • Aerobes: use oxygen in metabolism; obligate. • Microaerophiles: require oxygen (also obligate), but in small amounts. • Anaerobes: grow without oxygen; SEE NEXT A: aerobeB: microaerophile • Capnophiles: require larger amounts of carbon dioxide than are found normally in air.

15. Anaerobes grow without O2 • Classifications vary, but our definitions: • Obligate (strict) anaerobes: killed or inhibited by oxygen. • Aerotolerant anaerobes: do not use oxygen, but not killed by it. • Facultative anaerobes: can grow with or without oxygen C: could be facultative or aerotolerant.D: strict anaerobe

16. Effect of temperature • Low temperature • Enzymatic reactions too slow; enzymes too stiff • Lipid membranes no longer fluid • High temperature • Enzymes denature, lose shape and stop functioning • Lipid membranes get too fluid, leak • DNA denatures • As temperature increases, reactions and growth rate speed up; at max, critical enzymes denature.

17. Bacteria and temperature • Bacteria have temperature ranges (grow between 2 temperature extremes), and an optimal growth temperature. Both are used to classify bacteria. • As temperature increases, so do metabolic rates. • At high end of range, critical enzymes begin to denature, work slower. Growth rate drops off rapidly with small increase in temperature.

18. Classification of bacteria based on temperature

19. Terms related to temperature • Special cases: • Psychrotrophs: bacteria that grow at “normal” (mesophilic) temperatures (e.g. room temperature” but can also grow in the refrigerator; responsible for food spoilage. • Thermoduric: more to do with survival than growth; bacteria that can withstand brief heat treatments.

20. pH Effects • pH = -log[H+] • Lowest = 0 (very acid); highest = 14 (very basic) Neutral is pH 7. • Acidophiles/acidotolerant grow at low pH • Alkalophiles/alkalotolerant grow at high pH • Most bacteria prefer a neutral pH • What is pH of human blood? • Some bacteria create their preferred conditions • Lactobacillus creates low pH environment in vagina

21. Low water activity:halophiles, osmophiles, and xerotolerant • Water is critical for life; remove some, and things can’t grow. (food preservation: jerky, etc.) • Halophiles/halotolerant: relationship to high salt. • Marine bacteria; archaea and really high salt. • Osmophiles: can stand hypertonic environments whether salt, sugar, or other dissolved solutes • Fungi very good at this; grandma’s wax over jelly. • Xerotolerant: dry. Subject to desiccation. Fungi best • Bread, dry rot of wood • Survival of bacterial endospores.

22. Miscellaneous conditions • Radiation (solar, UV, gamma) • Can all damage cells; bacteria have pigments to absorb energy and protect themselves. • Endospores are radiation resistant. • Deinococcus radiodurans: extremely radiation resistant • Extremely efficient DNA repair, protection against dessication damage to DNA. • Barophiles/barotolerant: microbes from deep sea • Baro- means pressure. Actually require high pressure as found in their environment.