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Ssq1(L)

A2-TD. A2-VH. A1-TD. A1-VH. p48t67v280. 0.0. p58m71h154. 0.0. ec3b4. 0.0. At3g02420. e31m50t345. 0.0. 1.1. p48t67v280. 2.2. e43m50h155. 1.1. At5g08280. 3.2. 6.4. At5g08280. 5.0. e43m50h155. At3g08690. 3.0. 5.4. At5g10780. 7.2. p33m71v139. At3g07950. 7.7. At3g07950.

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Ssq1(L)

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  1. A2-TD A2-VH A1-TD A1-VH p48t67v280 0.0 p58m71h154 0.0 ec3b4 0.0 At3g02420 e31m50t345 0.0 1.1 p48t67v280 2.2 e43m50h155 1.1 At5g08280 3.2 6.4 At5g08280 5.0 e43m50h155 At3g08690 3.0 5.4 At5g10780 7.2 p33m71v139 At3g07950 7.7 At3g07950 7.9 6.4 At5g12290 At5g12290 11.7 e46m59h255 8.6 e46m59h255 8.5 At5g13190 13.2 e54t69v150 9.4 16.2 e31m42v225 e31m42v225 16.6 At3g10810 16.2 At5g20180 17.9 At3g02420 19.7 At2g23930 19.4 At5g19150 20.0 At5g19150 22.9 24.8 e39m50v131 29.3 e31m61d145 At3g16760 e46t65h723 25.9 27.2 e54t69v150 32.2 At2g40800 28.2 e47t74d400 26.4 30.4 e44m38h212 34.8 e44m38h212 At2g23930 e44m38v452 29.8 32.3 Sqp1(D) 33.1 At4g26840 Sbr1(D) At4g26840 36.2 e31m61h98 30.6 e31m60h325 p62t78v278 36.9 37.4 p62t78v278 39.5 At4g24160 35.4 e51t78v89 40.9 41.5 At1g68310 p79t78t270 39.4 e47t74v450 42.5 43.0 p53t82t350 e34m43h450 44.3 At4g20150 45.7 At3g16760 46.1 At1g68310 46.4 At1g73090 46.1 At4g18400 47.7 e45m34v162 47.4 At1g73090 48.9 e35t63v301 48.8 At1g70350 51.6 At3g22240 48.0 51.7 e42m32v232 At4g30150 55.3 At1g72890 Msl1(L) 49.0 53.3 e31m49h310 56.7 e31m61h98 At1g74640 50.5 57.6 p33m32h410 e44m38v452 59.8 53.6 e35t63v301 Tsw1(G) e43m50v152 Ssq1(L) 60.6 Na14-G06a 63.1 54.5 e42m32v232 At4g33480 66.1 At1g71930 66.5 e50t70h76 55.5 e47t71v132 66.8 69.9 p33t83h171 e51t78v378 57.7 Sqms1(L) e34m49d70 73.7 71.7 p33m38v313 At2g01640 58.8 p87m38v911 p65m32v295 74.7 75.3 e31m49h310 59.6 61.5 e51t78t200 e34m43v260 79.7 80.1 e34m50v155 62.9 e43m50v152 82.8 At5g61970 84.0 p53m33v167 88.7 e45t66v714 At2g24765b 92.4 98.3 At4g31720b At4g34140b 103.2 112.4 e62m33v765 At4g37280a 117.6 At4g39690 121.0 125.0 At4g39350a Supplementary Fig. S3 The framework TD and VH maps showing distribution of QTL for 12 yield associated traits. Linkage groups of the TD and VH maps have been suffixed with TD and VH respectively. Common markers among the two maps have been underlined. QTL were designated using the trait name initials followed by the number identifying the QTL number for the trait (Supplementary Table S6). The allele that increased the trait value is indicated by red bars (TM-4 in TD and Varuna in VH map) and the blue bars (Donskaja-IV in TD and Heera in VH map). The alphabet in the parenthesis indicates the environment (D - Delhi, B - Bharatpur, G – Gwalior, L – Leh) where the QTL were detected. Plant height (Plht), Primary branches (Pbr), Secondary branches (Sbr), Main shoot length (Msl), Siliqua per main shoot (Sqms), Siliqua per plant (Sqp), Siliqua length (Sql), Seeds per siliqua (Ssq), Thousand seed weight (Tsw), Siliqua density (Sqdy), Days to flower (Df), Seed oil content (Oil)

  2. A3-VH A3-TD A4-TD A4-VH 0.0 At4g25140 e32t70v718 0.0 3.7 Ra3-D02B At4g00585b At2g44050 1.7 0.0 At4g26240 4.4 At2g44520 Tsw1(D) 0.0 e31m42v250 6.1 At4g30310 7.6 6.1 p63t78v400 At4g21105 10.0 At2g43080 7.3 At4g26240 12.0 11.7 Na14-G02 Oil1(L) At4g24440 15.4 12.6 At4g17900 At2g40890 12.7 Na14-G02 17.6 13.4 e31m50h87 p63t78v400 13.5 e31m47v111 At4g20150 19.1 BRMS-050 17.3 15.3 DF1(L) At4g17900 At2g42040 p32t77v330 21.5 19.1 19.2 p48t67h390 At3g52300 At2g40690 24.2 22.1 25.0 24.2 At2g35770 BRMS-050 26.9 26.1 p37t64t198 p58t68v455 25.4 p32t77v330 27.3 At3g21400 31.7 e31m47v111 29.4 33.9 At3g13120 p48t67h390 37.0 At2g36530c 33.3 At3g12590 36.2 Df1(D) e39m50h181 At3g21400 37.2 41.6 e48m39v100 38.1 Sql1(D) p62m45v184 46.6 Msl3(D) At2g22640 46.5 At2g32520 48.6 At4g02580 44.5 e39m50h181 48.9 49.4 e50t67d138 53.9 e31m61d340 At2g31490a 47.8 50.7 At5g41560 At2g23390 54.5 At2g30130 52.2 At5g37480 At3g03960 53.7 57.8 At2g42680 56.6 At2g28880b 55.3 p62t78d120 56.0 e62t65h390 60.3 At2g39910 60.7 At3g54130 58.0 At2g38880 62.7 p53m33v180 64.2 p33t65h259 61.2 e35t63d200 59.2 63.4 e51t78v325 Sql2(B) Tsw4(D,G) Tsw3(L) At2g23090b 69.2 At2g22640 65.6 At2g31490 68.8 Sqp1(D) At2g23390 72.7 At5g41560 68.0 BN12A 71.0 At2g28520 75.3 At5g37480 71.0 Msl2(L) Ni2-F11(N73) 74.7 76.5 At5g18800 Sqdy1(D,B) Ra2-F11 81.4 At3g63420b 77.1 80.3 At5g17560 e51t78v325 83.7 At5g15840a 80.9 At2g31490 86.1 Sbr1(G) BN12A 90.4 Tsw2(D) At3g46180 96.2 Ra2-E11 100.2 p33m38h274 104.5 At5g15230 108.4 e34m62h290 116.5 At5g06240b 126.0

  3. A5-VH A6-VH A5-TD A6-TD e35t63v240 0.0 e35t63v240 0.0 e50t66h460 p40m82h178 3.9 e31m50d105 0.0 0.0 1.8 At5g17310 e50m32v220 8.8 At1g51740a 4.1 4.0 e34m62d250 e50t66v470 10.0 6.6 At1g08580 5.9 At2g26320 9.0 p33m71v159 At1g12230 10.4 12.8 At3g09925 p32t77h310 13.5 p32t77h310 18.9 At1g48580 14.8 At1g15780 15.5 e31m50d330 17.8 p32t77v301 24.1 Plht1(L) 21.5 e43m59v128 Tsw2(D) At1g18730 24.4 At2g23930a Df2(D) 28.9 25.6 At1g12840a 27.2 e31m61h115 26.7 e31m50t98 Ssq2(G) 30.4 p32t77v105 30.1 At1g20830 e62m35h190 36.6 32.1 At1g12230 32.3 e47t74t280 At3g12120a 37.5 e31m49v295 36.2 Sqdy1(L) At1g16520 At2g17420 36.1 35.9 Ra3-H10 39.4 e31m61v136 Ssq1(L) 37.5 At2g18910 36.5 At3g16310 43.5 DF2(D) 40.3 At5g25760 Na10-B08 38.4 Tsw5(G) p53t76h292 At5g27740 45.3 41.9 38.9 e31m42v144 45.6 e31m61h115 e34m49h160 44.1 41.8 At2g32920 Na10-B08 52.9 Sql1(G) e47t70v258 e31m49v295 50.5 At5g24090 53.6 44.3 At2g36360 e34m62v157 e39m32v203 49.5 55.5 53.1 At2g32920 60.7 56.5 At2g45790 59.4 e34m49h160 At2g01350 57.7 e43m59h99 65.0 63.7 At3g26370 Oil2(D) e31m604h330 66.4 Sql3(D) Ra2-F04 69.4 e39m32t175 67.7 e60m42v165 70.0 At2g44970 75.7 68.9 At5g42850 71.5 At2g46390 76.3 At2g01350 BRMS-034 80.9 At5g47040 81.9 At2g46390 88.4 At1g72450 83.9 p80m48h280 90.1 At5g40670 87.4 e47t70h124 91.4

  4. A7-TD A7-VH A8-TD A8-VH At1g75690 0.0 At4g14570 0.0 At1g76540 0.0 At4g31720 0.0 3.0 At1g74140 e31m60t115 Sqdy2(D) 3.4 Sbr2(D) Plht1(D,G,L) 5.3 At1g73240 4.8 At1g70800 DF4(L) e32t70v720 8.6 Ssq2(D) Pbr1(D,G) 8.9 e60t65v253 Oil1(D,G) Plht3(D) At1g29580 At1g68310 DF3(D,L) 9.5 12.5 e31m60h92 11.8 Sbr2(B) 15.4 p62t78v211 At3g13950 19.0 14.9 At4g15510 19.1 e31m42h173 18.3 p53m42h153 23.0 At1g53460 e32t66v191 20.2 25.3 At1g50240 Ssq3(L) Oil2(D,G,L) At1g68310 23.2 26.6 e31m60h92 23.6 At4g31460 At1g79040 25.8 At1g68370 26.0 Sql3(D) At4g15510 27.5 Plht2(L) At4g28200 27.9 29.1 p62t78v211 e32t66v191 30.4 Pbr1(D) Sqms1(L) At4g31720 32.4 e48m34h182 31.3 34.7 e32t66h88 At1g79040 Plht2(D) 36.0 33.0 At4g29960 At2g27490 Tsw6(D) 39.1 35.1 p58t83t373 38.9 At1g28530 Tsw3(L) e34m50v137 42.7 Ra2-A01a 41.6 37.3 At4g31460 At1g24310 43.5 At2g26670 44.0 44.7 At3g55005c Plht4(L) At4g38470 41.8 46.9 At1g25540 46.4 e39m50h450 At1g28530 44.8 Msl1(L) e32t66h88 Oil3(D,L) 48.9 48.4 e39m50v470 At1g25540 48.9 e39m32h153 52.6 51.1 At1g18340a Sql2(L) 53.4 At1g76670 At1g77350 53.2 At2g28880a 55.7 54.2 e39m50v470 Sbr3(D) 58.9 e50t66h139 59.1 At2g27490 At1g70310 59.5 e45m34h102 Sql4(L) 61.6 e60t65v148 63.3 e39m50h450 62.6 e60t65v148 At2g18900 63.8 64.4 66.0 At1g23440 At1g11880 e39m50v360 Oil3(G) 66.3 67.0 68.1 At1g11880 71.8 e50t66h139 69.0 At2g19560 At1g11240 Tsw4(D,L) 70.0 At3g24800 73.5 At1g09760 At2g16860 74.4 75.3 e48t78v400 75.7 p48t67t220 At2g18900 77.3 76.4 p53m48v164 77.2 Sqp2(G) 78.6 At1g08480 Sbr3(G) 79.4 At1g70800 80.7 e48t78v400 p48t87v295 p48t67d421 81.8 81.5

  5. A9-VH A9-TD At4g02580 GSl-odd 0.0 0.0 Sql4(G) GA-R2 12.3 At4g02580 13.6 At5g27210 19.0 At5g25610b 22.0 21.7 At1g28100 At2g14170 25.5 26.8 e34m43h360 32.1 e31m58v250 At2g19260 32.1 e50t66v251 35.6 e31m50t340 39.0 At5g67590 40.8 41.8 e31m58v289 44.9 p87t77h282 e55t63v118 At2g14170 48.4 47.5 At4g05530 At2g17420 Sqp3(G) 49.0 50.4 Sbr4(L) p32t77h400 50.8 53.8 At1g29990b Tsw5(L) Sqp2(L) Ssq3(D,L) 56.5 At2g19260 At3g51260 Sql5(L) 56.3 Sqdy3(D,L) p53m62v345 59.1 e44m38v214 59.0 59.7 At3g55430 63.4 e50t66v251 Sbr4(G) 63.3 e34m62v390 68.5 At4g05530 70.6 At1g62640 Sbr5(L) e31m58v289 73.0 e46m59h132 72.2 p87t77h282 76.7 74.6 At3g43520 Tsw7(G,L) Sqdy2(L) At4g09760 77.7 77.9 e44m39h214 78.5 At4g09060 79.5 At2g22370 80.5 p32t77h400 At2g21120 82.4 81.3 p48t94h390 At2g20490 85.6 p48t67h318 84.7 p63t71h213 Pbr2(L) 89.5 e48t78h140 86.1 92.0 At1g11880 At3g51260 91.3 94.7 e62t65d185 96.2 p58m71v952 98.8 p48t94h261 98.9 e44m38v214 At1g05205 99.3 101.4 At3g55430 e34m62v390 105.0 At2g25740b 109.7 At2g38380 108.4 At3g43520 113.6 117.2 At2g20490 120.8 At2g20760 Sqp4(D) 123.1 At1g16190 p63t71h213 126.8 e46m59v304 128.8 e43m59h106 130.2 133.4 At1g11880 At1g05205 140.9 At2g22370 142.9 e50t67h113 147.8 148.4 p48t94h261

  6. A10-TD A10-VH 0.0 At1g02870 0.0 e34m43h119 1.9 e50t66h372 0.7 At1g02870 Sql5(L) e62t65v520 4.1 2.4 e50t66h372 e45m34v225 4.9 e62t65v520 5.9 At5g59140 9.2 e50m32h84 10.0 e39m50v415 11.6 At5g59140 13.1 Sbr6(B) 13.3 e60t65v275 13.9 e60t65v275 16.4 p79t78d67 15.1 e58t75v160 Tsw6(D) Oil4(D,B) Pbr3(D,B) Msl2(D,B) 17.8 At5g20250 At5g18670 20.3 Df3(D,B) At5g17270 27.3 At5g16280 25.7 Sqms2(D) Oil4(D) Sql6(D,B) At5g16330 28.1 Tsw8(D,G,L) Sql6(D,G) Ssq4(D,B) Sqms3(L) Sqp5(D,G,L) 30.5 At1g72550 DF5(D,G,L) Sbr5(D) Sqdy4(D,G,L) 35.2 p63t78d239 Pbr2(D,G) Sqdy3(D,B,L) Sqp3(D,B,L) 32.6 At5g15400a Ssq4(D,G) Plht5(D,B,L) Sqms2(D,L) Plht3(D,G,L) 34.5 At5g14920 At5g13190b 37.8 e34m62t170 wg8g7 44.4 41.2 Msl3(L) Ni4-A03 44.1 At5g09310 49.5 49.9 At5g09310 52.9 p48m67v150 56.4 At5g06240a At5g05920a 58.9 ec5a7 62.8 Sbr6(G) At5g07690b 65.6 Sqms4(D) 68.7 At5g01160 70.0 p62m66v931

  7. B2-TD B2-VH B1-TD B1-VH e31m58v195 0.0 e35t69h736 0.0 2.1 At4g37280 e34m49v101 0.0 5.3 At4g36960 At1g70560 e31m58v195 0.0 6.4 e31m50h115 0.9 3.1 e34t74h719 9.0 p37t64h400 2.3 p58t68h380 12.2 At4g37280 3.5 e50t67v120 e34m62v219 14.1 p61m57h196 e34m49v101 15.2 11.7 e62t65h258 4.9 16.1 At4g34140 e31m50h115 12.6 At3g10572 5.4 17.0 e39m50v390 20.9 e34m62v219 e58m40h247 15.4 e43m50v270 6.1 At4g33100 20.5 21.6 At4g34460 16.2 e34m62v184 At3g11620 8.7 At2g24640 23.2 19.7 e34m47h198 14.1 At3g16640 At4g30790 26.6 e39m50v390 29.0 22.3 At3g10572 16.3 At3g17300 30.4 At4g29660 30.6 At4g34140 Sqms3(D) p32m66v901 27.0 e44m38v420 17.3 31.1 e35t63h328 34.2 At4g33925 At3g17300 30.5 At3g20920 19.9 36.9 At4g33100 At3g18600 31.5 e39m32v85 22.7 p63t71h260 41.8 42.1 p33t65v199 e62t65v126 33.9 At3g20920 27.0 44.3 At4g23860 44.9 At4g31130 35.5 p62t73h228 28.5 At5g28750 46.6 At4g24680 46.7 At4g30790 38.7 p33m71v920 31.7 At5g25080 At4g20410 50.1 At4g29660 52.4 Ni2-A07 40.8 e31m50t430 36.6 e31m62h345 53.8 At4g27490 56.0 e45m34h101 44.7 e34m50v294 40.8 At4g15530 55.6 60.2 Na14-G06b Tsw9(L) e39m32v85 47.8 At1g58220 44.5 e44m39h285 56.6 62.3 p63t71h260 49.0 e62t65v126 46.8 At2g41840 58.9 e44m38h103 65.0 Ni2-D10 51.6 At5g28750 48.0 e44m39h131 60.6 At5g16490 e31m47v132 67.2 53.2 At5g25080 49.1 e47t74t394 At4g17050b 70.9 e34m50v294 55.3 At3g19900 53.0 Ni2-D10 e34m43h350 72.8 73.7 At1g58220 60.1 At3g51260 54.7 74.1 At3g45100 76.0 At5g20010 At5g20060 64.1 e35t63v144 55.5 76.1 e47t71t210 77.3 e31m62v199 68.1 e32t70h745 63.0 e43m50d80 Sqms4(D) e31m47v132 p63t71h163 80.1 79.8 69.3 e35t63v144 64.1 p48t94t128 e60t77h360 Ni2-A12 82.8 81.6 Plht6(L) p53m42h188 73.8 e34m49t420 p63t71v158 87.3 83.5 At3g14850 78.5 At3g08690 75.2 e31m62v199 Ni2-A11 90.0 87.2 Tsw10(D) Plht4(G) 93.6 p37t64h179 e55t73h102 82.5 p87t77h157 94.0 94.4 Ni2-A12 At3g12260b 89.4 e44m50v120 83.7 e31m60t250 96.5 e45m34h345 95.1 p32t77v313 100.5 At1g65910 At3g08690 97.4 95.2 e55t73h102 p87t77h157 99.2 98.5 e32t66h340 104.9 p87m38h152 101.5 e44m50v120 100.6 Sql7(D) 103.1 p32t77v313 110.6 e34m50v99 105.9 At5g15650 104.4 e32t66h340 e34m49v340 114.8 At1g72740 110.7 e62t65h442 117.1 e34m49v340 111.7 e62t65h420 119.6 e62t65h420 113.8 122.8 At1g75980 At3g13062 117.3 115.8 At1g75980 124.6 e62t65h147 116.9 e62t65h147 126.0 p61m57h298 121.9 e44m39h184 At1g78040 129.5 e44m39h184 134.0

  8. B4-TD B4-VH B3-TD B3-VH e31m47v96 0.0 e31m60v171 0.0 At3g60810 0.0 At1g80460 1.2 e47m43h258 0.0 3.2 At3g59110 At3g52990 5.0 4.2 At4g14110 e35t63h210 5.0 7.2 At1g68220 Sql8(G,L) 9.2 At3g52990 e31m47v96 13.1 15.8 e31m47v235 At3g56290 17.3 16.5 At3g55005 20.6 At3g63420a Tsw7(B) At3g54130 18.3 e55t63h137 23.6 At3g55005 At3g53190b 27.6 26.4 At3g51130a 28.6 Sqdy5(L) At3g54670 28.2 30.8 Ra2-A01b 30.0 At4g04190 At3g54130 29.8 32.8 e51t78v106 32.7 e45m34h308 32.3 At3g52990 36.4 p63t78t87 Tsw11(G) Sqms5(G) 36.5 At3g45620 35.3 e34m49t290 38.5 At1g79690 At1g80460 41.0 p58t68h192 37.8 At4g32690 40.8 42.4 p48t67h420 44.2 At1g79690 Ni4-F11 39.0 Ni4-F11 42.4 45.2 At1g79390 p33m71h286 39.8 p58t68h192 Sqp7(L) 43.8 p61m44v315 48.9 43.9 Ni3-G05 44.7 At3g45620 50.5 p48t67h420 p33t65h275 46.9 At4g01310 52.5 46.7 e51t78t380 At4g01897b 50.0 50.5 At4g00585 56.4 At2g21620b Sbr7(L) Sqp4(L) Ni4-C11 53.2 At4g01310 55.7 Sql9(D) At1g16740 60.6 At4g10180 57.1 At2g26590 58.4 Oil5(D) At2g26590 Sqdy6(G) 59.1 p79t78t180 64.0 e31m50v255 64.9 Ni4-A10 60.1 61.7 At2g45690b 63.6 e42m32h225 Ssq5(B) At2g32080 68.3 65.6 e44t66v745 67.1 e42m32d300 Tsw12(D,L) At2g28190 71.6 Sbr7(D) Sqp8(D) e42m32h225 68.0 69.9 e42m32h196 e31m62v188 74.2 e62m33v83 71.8 76.1 p63t78h425 78.4 At5g65220 At2g38810 75.3 e35t63v215 77.1 77.7 At2g36530a 83.1 p53t91v190 At5g59140 81.6 81.2 e42m32h196 Oil6(B) Sqdy7(L) Sqms6(L) Sqp6(L) 85.0 e31m42h108 86.7 e47t71v342 89.8 At1g58260 88.5 e31m50t334 Ni2-A08 89.3 At5g15750 90.5 p63t78h425 93.2 93.1 p87t77v400 e35t63v215 95.7 At1g47570 99.7 97.6 At5g59140 Tsw13(D) 98.9 At5g13030 At2g38130 99.1 e44m38v226 103.8 Msl4(L) At2g37560 e31m42h108 105.4 103.1 e34m62t210 102.7 Sqms7(L) p53t91t335 105.9 At5g17410 105.0 106.6 At5g09310 At5g15750 109.0 e47m33v212 114.2 At2g38130 112.3 At5g13030 112.3 At2g36930b 116.8 e31m42t165 115.9 118.4 e60t77d250 118.0 p53t82h195 121.3 At2g45790 p65t71h400 123.1 Sqms5(B) 125.0 At5g09310 127.6 wg6d7b Pbr4(B) At2g44610 127.7 e47m33h155 127.4 Pbr3(G) Oil7(L) 129.8 At5g01220 131.5 At2g40765

  9. B5-TD B5-VH B6-VH B6-TD At1g49340b e39m50h134 0.0 0.0 At3g02860 0.0 At3g02420b 0.0 3.2 e55t73d200 Oil5(G) e47t71v185 5.6 4.0 p87m38v912 6.3 e31m61t310 Ni2-E05 8.5 8.3 p61m44v945 e34m50v88 11.4 11.9 e42m32v198 p58m35v108 11.7 13.3 At5g47090 15.9 p58m35h400 13.7 e60t65d400 14.8 e48m34v838 e39m50h134 17.2 e55t63v224 19.6 At3g12260a 19.9 23.8 p53t82t138 e42m32v198 22.9 At3g12120b 21.7 p53t82d145 24.6 24.7 At1g20410 At3g15190a 23.5 At1g10840 26.7 27.2 p62t78v265 At1g10585 27.6 31.2 At1g19240 At2g28080 32.2 e45m34v205 34.7 40.3 e62m33h146 At3g11620 37.9 39.7 e60t65h390 41.9 At1g63980 44.2 At1g10840 e44m39h175 43.7 At2g15430a 46.2 e31m58v218 46.4 e31m49v245 49.7 47.1 e31m60h390 At2g03510 48.6 Sqp5(D) p53m62h282 51.2 At2g28190 51.5 53.6 p33m67v145 e39m32t200 52.7 53.1 At2g29980b 58.0 e44m39h175 57.3 e48m32v287 Msl5(G) 60.0 e31m58v218 61.2 e54t71v258 At3g16190 60.3 e62m32h77 63.4 e45m34v273 64.4 e31m61t105 63.4 At3g20320 At2g01940 63.7 66.7 Sqdy4(L) Df4(B) p65m47v320 At2g01400 64.9 66.1 Plht7(B) e31m62d210 e49m35h211 66.4 68.8 At3g27340 67.9 Sqms8(G) 69.9 At1g78560b p32t93t280 72.0 e50t66h287 69.6 At2g02500 70.3 75.7 e31m62h288 e62m33h107 73.9 73.7 e31m60h390 Df6(D) e39m32t110 77.6 87.5 GE-N1 Oil8(D) p32t77d390 86.1 90.1 At2g31040 94.4 e54t71v258 e45m34v273 96.4 e47t71t170 97.4 103.5 At2g38290 At2g40340 105.6 107.4 At2g42430 108.5 At2g43430 111.5 At2g43920

  10. B7-TD B7-VH B8-TD B8-VH At1g05205 0.0 At1g05720 At1g05720 0.0 0.0 At2g29920 0.6 p63t78t198 0.0 3.2 At2g20320a Ssq5(L) 5.6 e31m50v208 e39m32h75 7.2 e39m32h225 14.9 e34m50h133 12.4 e44m39v113 9.6 15.5 At4g15520 13.0 e31m50v208 At1g74140 13.3 At1g61720 15.9 Tsw8(D) e32t66h147 15.0 e31m47h232 18.5 17.5 At1g72380b p33t66v200 16.5 e50t66v96 16.7 e39m32h75 19.5 19.7 Na12-A02 Sqms6(B) e34m50h133 20.3 Sqp9(D) Sql8(L) 24.5 e31m50h335 24.0 e32t66h147 Df7(L) e44m38d190 24.1 25.3 At1g67170 At2g07690 27.9 At2g23090 30.2 30.0 p53m48v345 At1g68660 30.5 e46m59t120 29.7 Pbr4(D) 32.7 At2g20760 e39m50v112 32.7 At5g58730 37.9 36.0 At2g23090 34.7 At1g73530 At5g22640 38.9 38.7 e51t78d210 Plht5(D) e31m50h335 39.2 38.3 At1g73840 39.8 e35t63h280 40.1 At1g67170 At5g58730 42.5 42.6 e46t65v708 e39m50v112 At5g18200 42.3 45.0 e39m50v209 46.1 At5g22640 45.6 At1g68660 43.6 e46t65v706 48.6 Sqms7(L) Plht8(L) At1g73530 44.4 At1g70980 At5g19930 50.5 52.2 53.3 At5g10070 45.8 p79t78v127 54.1 e50m32h209 55.9 e44m39v300 At5g18200 49.4 e39m50v209 56.8 Sqp6(B) 57.9 e31m58h500 57.3 e39m50h446 Sql10(D) 50.1 e31m42d385 At1g23440 59.1 60.8 Ni4-F09 Sbr8(B) e39m50h446 Msl4(L) 56.2 64.1 At5g15400b 65.3 e51t78v490 e51t78h340 57.2 68.4 e55t63v143 Plht6(D,L) At4g20150 Oil7(D) e46m59h278 67.7 58.4 70.0 At5g15840b p53t76h368 Df8(D) 70.4 62.1 e51t78v490 At5g09310b 74.9 At4g34520 74.9 66.4 At4g20150 At5g10070 75.4 78.5 e48t78v205 68.6 e48t78v205 e50t66v96 77.2 80.1 e31m49v160 e31m49v160 79.4 At5g08280 69.9 79.0 e31m58h500 81.8 At1g23180b At1g26180 71.2 Sql11(G) 83.0 e47t71h340 Tsw9(B) At1g26180 Oil6(G) At1g02090 85.0 77.2 e31m50h202 85.5 At1g28560a 89.6 84.3 e44m50t280 Plht7(G) e44t75v235 90.3 85.8 At4g31720 At5g28750 92.8 p37t64v128 97.9 p33m38v260 94.1 Sqms8(L) 100.4 e31m50h202 Plht9(D) Oil9(D) At5g28750 p53t82h210 102.6 100.8 Ssq6(D,B) Df5(D,B) Sqdy5(D,B) p53t82h210 At1g76670 104.2 104.7 At4g16060 103.9 Tsw10(L) At3g51240b 109.4 109.9 e46t65h726 106.1 At1g08780 110.3 At5g24490 p32t77v268 107.0 At1g09760 113.1 p48m67h295 Pbr5(D) 114.9 Sql7(D,B) Msl5(D) p62m59h400 At1g04950 117.4 111.6 At4g07666a 117.8 At1g09760 p58t68t350 119.2 113.1 At5g24314 119.9 121.6 At1g08780 Sql12(L) At5g24314 120.0 123.8 e62m32v179 124.9 At1g05055 126.1 At5g27380 At1g05850 126.5 126.9 At5g27380 e50t66v323 128.0 At1g02410a 128.9 127.6 e50t66v323 Ssq6(L) Oil8(D) 135.2 At4g25140 At4g25140 131.2 136.5 At4g26240 At4g26240 133.4 p63t78h267 143.3 p63t78h267 146.8

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