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WebQTL

WebQTL. Complex trait analysis beyond QTL mapping www.webqtl.org webqtl.org. WebQTL Analysis. WebQTL Components. WebQTL pages (Python). Phenotype & Genotype data (MySQL). QTL mapping & Correlation (C). Search BXD trait data. Search results. Analysis selection window.

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WebQTL

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  1. WebQTL Complex trait analysis beyond QTL mapping www.webqtl.org webqtl.org

  2. WebQTL Analysis

  3. WebQTL Components WebQTL pages(Python) Phenotype &Genotype data(MySQL) QTL mapping &Correlation(C)

  4. Search BXD trait data

  5. Search results

  6. Analysis selection window

  7. Genome-wide QTL mapping

  8. Analysis selection window

  9. Correlation search results

  10. Multiple probe choice

  11. Mutiple probe: single chromosome

  12. Tutorial

  13. Choice is good Stein, L (2002) Creating a bioinformatics nation. Nature417, 119-20.

  14. Trait data retrieval cmd=get&probeset=101741_at&db=1&probe=all&format=col

  15. Trait data formatted in rows cmd=get&probeset=101741_at&db=1&probe=all&format=row

  16. Genotype data in columns cmd=geno&riset=BXD&chr=1&format=col

  17. Single marker QTL mapping cmd=map&probeset=99856_r_at&db=1&sort=lrs&return=20

  18. Peak LRS from interval mapping cmd=interval&probeset=99856_r_at&db=1&sort=pos&return=10

  19. Scripted mapping and data retrieval

  20. What WebQTL is not • P-value plot of every 10th from 195,327 values Detail

  21. Web site design & coding Jintao Wang Kenneth F Manly Alex G Williams Published phenotype data Elissa S Chesler John C Crabbe John K Belknap Byron Jones Ryan McNieve Nathan Copeland Genotype/Genomic data Lu Lu Jing Gu Shuhua Qi John Hogenesch Timothy Wiltshire Yanhua Qu Brain expression data Lu Lu Siming Shou Yanhua Qu John Mountz HuiChen Su David Threadgill Acknowledgements • HSC expression data • Gerald de Haan • Michael Cooke • Leonid Bystrykh • Ellen Weersing • Bert Dontje • Andrew Su • Cerebellum expression data • UTHSC-St Jude Cerebellum Consortium • Vision and Motivation • Robert W Williams

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