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BSML v3.1: Comprehensive Biological & Computing Feature Representation

Explore BSML v3.1, a mature DTD offering flexibility to organize biological and computational features with incremental parsing. Leverage XML Schema for consistency and community support.

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BSML v3.1: Comprehensive Biological & Computing Feature Representation

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  1. BSML Object Layer Core BSML Elements BsmlParser • BSML Element implementation • Seq, Seq-Alignment, Feature… • BSML V3.1 Input • XML Schema validation BsmlWriter • BSML V3.1 Output BSML 3.1 BSML 3.1 Perl Client Application BsmlBuilder BsmlReader

  2. BSML Object Layer • Core objects • Mirror BSML elements from v3.1 DTD • Helper classes • BSMLBuilder/BSMLReader • Modular parsing • Directed parsing • Incremental parsing

  3. BSML Features • Comprehensive and generic representation of biological and computational features • Mature DTD • Flexibility to partition and link documents • Solves some concerns with document size • Community support • XML Schema • Used for enforcing consistent usage

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