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Run-time Adaptation of Grid Data Placement Jobs

This paper introduces a runtime adaptation approach for grid data placement jobs, addressing issues such as automation, failures, and changing network characteristics. The approach uses profilers and parameter tuners to dynamically adjust data transfer parameters based on the environment. A data placement scheduler and the Stork system are used for coordination and adaptation.

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Run-time Adaptation of Grid Data Placement Jobs

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  1. Run-time Adaptation of Grid Data Placement Jobs George Kola, Tevfik Kosar and Miron Livny Condor Project, University of Wisconsin

  2. Introduction • Grid presents a continuously changing environment • Data intensive applications are being run on the grid • Data intensive applications have two parts • Data placement part • Computation part Run-time Adaptation of Grid Data Placement Jobs

  3. Data Placement A Data Intensive Application Stage in data Data placement Compute Stage out data Data placement encompasses data transfer, staging, replication, data positioning, space allocation and de-allocation Run-time Adaptation of Grid Data Placement Jobs

  4. Problems • Insufficient automation • Failures • No tuning – tuning is difficult ! • Lack of adaptation to changing environment • Failure of one protocol while others are functioning • Changing network characteristics Run-time Adaptation of Grid Data Placement Jobs

  5. Current Approach • Fedex • Hand tuning • Network Weather Service • Not useful for high-bandwidth, high-latency networks • TCP Auto-tuning • 16-bit windows size and window scale option limitations Run-time Adaptation of Grid Data Placement Jobs

  6. Our Approach • Full automation • Continuously monitor environment characteristics • Perform tuning whenever characteristics change • Ability to dynamically and automatically choose an appropriate protocol • Ability to switch to alternate protocol incase of failure Run-time Adaptation of Grid Data Placement Jobs

  7. The Big Picture Monitoring Infrastructure @ Host 1 Memory Parameters Memory Profiler Disk Parameters Disk Profiler Network Profiler Data Transfer Parameters Network Parameters Tuning Infra- structure Data Placement Scheduler Network Profiler Disk Parameters Disk Profiler Memory Parameters Memory Profiler Monitoring Infrastructure @ Host 2 Run-time Adaptation of Grid Data Placement Jobs

  8. The Big Picture Monitoring Infrastructure @ Host 1 Memory Parameters Memory Profiler Disk Parameters Disk Profiler Network Profiler Data Transfer Parameters Network Parameters Data Placement Scheduler Network Profiler Disk Parameters Disk Profiler Memory Parameters Memory Profiler Tuning Infra- structure Monitoring Infrastructure @ Host 2 Run-time Adaptation of Grid Data Placement Jobs

  9. Profilers • Memory Profiler • Optimal memory block-size and incremental block-size • Disk Profiler • Optimal disk block-size and incremental block-size • Network Profiler • Determines bandwidth, latency and the number of hops between a given pair of hosts • Uses pathrate, traceroute and diskrouter bandwidth test tool Run-time Adaptation of Grid Data Placement Jobs

  10. The Big Picture Monitoring Infrastructure @ Host 1 Memory Parameters Memory Profiler Parameter Tuner 1 Disk Parameters Disk Profiler Network Profiler Data Transfer Parameters Network Parameters Tuning Infra- structure Data Placement Scheduler Network Profiler Disk Parameters Disk Profiler Parameter Tuner 1 Memory Parameters Memory Profiler Monitoring Infrastructure @ Host 2 Run-time Adaptation of Grid Data Placement Jobs

  11. Parameter Tuner • Generates optimal parameters for data transfer between a given pair of hosts • Calculates TCP buffer size as the bandwidth-delay product • Calculates the optimal disk buffer size based on TCP buffer size • Uses a heuristic to calculate the number of tcp streams No of streams = 1+ No of hops with latency > 10ms Rounded to an even number Run-time Adaptation of Grid Data Placement Jobs

  12. The Big Picture Monitoring Infrastructure @ Host 1 Memory Parameters Memory Profiler Disk Parameters Disk Profiler Network Profiler Data Transfer Parameters Network Parameters Tuning Infra- structure Data Placement Scheduler Network Profiler Disk Parameters Disk Profiler Memory Parameters Memory Profiler Monitoring Infrastructure @ Host 2 Run-time Adaptation of Grid Data Placement Jobs

  13. Data Placement Scheduler • Data placement is a real-job • A meta-scheduler (e.g. DAGMan) is used to co-ordinate data placement and computation • Sample data placement job [ dap_type = “transfer” ; src_url = “diskrouter://slic04.sdsc.edu/s/s1” ; dest_url=“diskrouter://quest2.ncsa.uiuc.edu/d/d1”; ] Run-time Adaptation of Grid Data Placement Jobs

  14. Data Placement Scheduler • Used Stork, a prototype data placement scheduler • Tuned parameters are fed to Stork • Stork uses the tuned parameters to adapt data placement jobs Run-time Adaptation of Grid Data Placement Jobs

  15. Implementation • Profilers are run as remote batch jobs on respective hosts • Parameter tuner is also a batch job • An instance of parameter tuner is run for every pair of nodes involved in data transfer • Monitoring and tuning infrastructure is coordinated by DAGMan Run-time Adaptation of Grid Data Placement Jobs

  16. Coordinating DAG This part executes at startup and whenever requested This part executes periodically Disk Profiler Parameter Tuner Memory Profiler Network Profiler Lightweight Network Profiler Parameter Tuner Run-time Adaptation of Grid Data Placement Jobs

  17. Scalability • There is no centralized server • Parameter tuner can be run on any computation resource • Profiler data is 100s of bytes per host • There can be multiple data placement schedulers Run-time Adaptation of Grid Data Placement Jobs

  18. The Big Picture Monitoring Infrastructure @ Host 1 Memory Parameters Memory Profiler Disk Parameters Disk Profiler Network Profiler Data Transfer Parameters Network Parameters Tuning Infra- structure Data Placement Scheduler Network Profiler Disk Parameters Disk Profiler Memory Parameters Memory Profiler Monitoring Infrastructure @ Host 2 Run-time Adaptation of Grid Data Placement Jobs

  19. Scalability • There is no centralized server • Parameter tuner can be run on any computation resource • Profiler data is 100s of bytes per host • There can be multiple data placement schedulers Run-time Adaptation of Grid Data Placement Jobs

  20. Dynamic Protocol Selection • Determines the protocols available on the different hosts • Creates a list of hosts and protocols in ClassAd format e.g. [ hostname=“quest2.ncsa.uiuc.edu” ; protocols=“diskrouter,gridftp,ftp” ] [ hostname=“nostos.cs.wisc.edu” ; protocols=“gridftp,ftp,http” ] Run-time Adaptation of Grid Data Placement Jobs

  21. Dynamic Protocol Selection [ dap_type = “transfer” ; src_url = “any://slic04.sdsc.edu/s/data1” ; dest_url=“any://quest2.ncsa.uiuc.edu/d/data1” ; ] • Stork determines an appropriate protocol to use for the transfer • In case of failure, Stork chooses another protocol Run-time Adaptation of Grid Data Placement Jobs

  22. Alternate Protocol Fallback [ dap_type = “transfer”; src_url = “diskrouter://slic04.sdsc.edu/s/data1”; dest_url=“diskrouter://quest2.ncsa.uiuc.edu/d/data1”; alt_protocols=“nest-nest, gsiftp-gsiftp”; ] In case of diskrouter failure, Stork will switch to other protocols in the order specified Run-time Adaptation of Grid Data Placement Jobs

  23. Real World Experiment SDSC (slic04.sdsc.edu) NCSA (quest2.ncsa.uiuc.edu) DPOSS data had to be transferred from SDSC located in San Diego to NCSA located at Chicago Transfer Run-time Adaptation of Grid Data Placement Jobs

  24. Real World Experiment WAN GridFTP DiskRouter Control flow Data flow Management Site (skywalker.cs.wisc.edu) SDSC (slic04.sdsc.edu) NCSA (quest2.ncsa.uiuc.edu) StarLight (ncdm13.sl.startap.net) Run-time Adaptation of Grid Data Placement Jobs

  25. Data Transfer from SDSC to NCSA using Run-time Protocol Auto-tuning Transfer Rate (MB/s) Time Network outage Auto-tuning turned on Run-time Adaptation of Grid Data Placement Jobs

  26. Parameter Tuning Run-time Adaptation of Grid Data Placement Jobs

  27. Testing Alternate Protocol Fall-back [ dap_type = “transfer”; src_url = “diskrouter://slic04.sdsc.edu/s/data1”; dest_url=“diskrouter://quest2.ncsa.uiuc.edu/d/data1”; alt_protocols=“nest-nest, gsiftp-gsiftp”; ] Run-time Adaptation of Grid Data Placement Jobs

  28. 1 2 3 4 Testing Alternate Protocol Fall-back Transfer Rate (MB/s) Time DiskRouter server killed DiskRouter server restarted

  29. Conclusion • Run-time adaptation has a significant impact (20 times improvement in our test case) • The profiling data has the potential to be used for data mining • Network misconfigurations • Network outages • Dynamic protocol selection and alternate protocol fall-back increase resilence and improve overall throughput Run-time Adaptation of Grid Data Placement Jobs

  30. Questions ? For more information you can contact: • George Kola : kola@cs.wisc.edu • Tevfik Kosar: kosart@cs.wisc.edu Project web pages: • Stork: http://cs.wisc.edu/condor/stork • DiskRouter: http://cs.wisc.edu/condor/diskrouter Run-time Adaptation of Grid Data Placement Jobs

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