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TAIR Workshop

TAIR Workshop. Eva Huala Donghui Li. TAIR is used worldwide. Beijing. 2,245 TAIR visits from Beijing May 30 – June 11. This workshop will cover:. Introduction to TAIR (19:30 – 19:50) Arabidopsis genome annotation (19:50 – 20:10) TAIR7 release Gene function annotation (20:10 – 20:40)

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TAIR Workshop

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  1. TAIR Workshop Eva Huala Donghui Li

  2. TAIR is used worldwide Beijing 2,245 TAIR visits from Beijing May 30 – June 11

  3. This workshop will cover: • Introduction to TAIR (19:30 – 19:50) • Arabidopsis genome annotation (19:50 – 20:10) • TAIR7 release • Gene function annotation (20:10 – 20:40) • GO and PO controlled vocabularies • AraCyc (20:40 – 21:00) • Metabolic pathway database

  4. What is TAIR*? • NSF-funded project begun in 1999 • Web resource for Arabidopsis data and stocks • Literature-based manual annotation of gene function • Genome annotation (gene structure, computational gene function) URL *

  5. Introduction to TAIR • TAIR website • Searching • Popular tools • How to order stocks • How to find help

  6. Portals

  7. Tools

  8. Search

  9. Two ways to search in TAIR Quick Search Advanced Search

  10. Quick Search ufo

  11. Names Description

  12. GO annotations Expression

  13. Sequences Maps

  14. Mutations Seed lines

  15. Links to other sites

  16. Seed lines Links to other sites

  17. Seed lines Links to other sites

  18. Seed lines Links to other sites

  19. Seed lines Links to other sites

  20. Comments References

  21. Most popular tools at TAIR BLAST Genome Browsers SeqViewer GBrowse (coming soon) AraCyc

  22. GBrowse - coming soon

  23. How to order stocks at TAIR Register yourself at TAIR Associate yourself to a lab Wait 1-2 days for account activation Search for seed or DNA stocks Order stocks Pay by credit card, check or money order

  24. mcclintock

  25. Very important!

  26. How to find help at TAIR • Click on Help • Click on • Email us at curator@arabidopsis.org ?

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