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Workshop: Visualization of Biological Complexes

Join us for a workshop on visualizing biological complexes in research labs. Explore current technologies, define future needs, and discuss challenges and solutions in sharing 3-D structures. Topics include structural features extraction, modeling macromolecular assemblies, quantitative visualization, and alternative representations.

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Workshop: Visualization of Biological Complexes

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  1. Workshop Visualization of Biological Complexes October 11-12, 2003

  2. Goals • Review technology in visual biology • Define future needs in visualization of biological complexes in research labs • Define challenges & solutions in sharing 3-D structures of complexes in public domain • What types of resources are needed? • What are the funding options to meet the research challenges in visual biology and bioinformatics?

  3. 9:00 am Chiu: Welcome and Introduction 9:15 am Berman Group: Challenges in Visualization of Complexes in PDB 10:05 am Coffee break 10:30 am Chiu Group: Structural Features Extraction and Animation of Complexes 11:20 am Sali Group: Modeling the Structures of Macromolecular Assemblies 12:10 pm Lunch Break

  4. 1:30 pm Bajaj Group: Quantitative Visualization of Static and Dynamic Biological Complexes 2:20 am David Goodsell, Michel Sanner, Art Olson: Representation, Implementation and Interaction: Challenges for Macromolecular Assemblies 3:10 pm Break 3:30 pm Ferrin Group: Multiscale Structural Modeling with UCSF Chimera and Data Quality Problems in Virus PDB Models 4:20 pm Carazo Group: Alternative Representation of Complexes

  5. 5:10 pm Chiu: General Discussions 6:00 pm Happy Hour 6:30 pm Dinner in the East Ocean Restaurant, 3199 Powell, Emeryville

  6. October 12 (Sunday) 8:45 am Moreland Group: MBT - A Java Toolkit for Molecular Visualization 9:35 am Delano Group: Issues Surrounding the Use of Open-Source PyMOL to Visualize Large Complexes 10:25 am Break 11:00 am Berman: General Discussions and Possible Future Collaborations 12:30 pm End

  7. Few Logistics • Meals • Room Charge • Travel reimbursement • Wireless Connection

  8. Summary • Problems in annotating complexes in PDB • New user interface for visualization to make visualization for “dummy” • New algorithms for quantitative visualization and representation • Cryo-EM (4-20 A) structures are expanding and need institutionalized archiving • Modeling tools are maturing to provide informative models for biologists • Continue an annual meeting and periodic video conferencing • Organize a special issue of papers in a journal

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