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Viewpoint ( genepi.qimr.au/viewapps/)

Viewpoint ( http://genepi.qimr.edu.au/viewapps/). Plotting Program for Linkage Results Harry Beeby & Sarah Medland Queensland Institute of Medical Research. A quick and easy way to view linkage results. Two main types of plots Univariate Multivariate-Univariate comparison

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Viewpoint ( genepi.qimr.au/viewapps/)

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  1. Viewpoint (http://genepi.qimr.edu.au/viewapps/) Plotting Program for Linkage Results Harry Beeby & Sarah Medland Queensland Institute of Medical Research

  2. A quick and easy way to view linkage results Two main types of plots • Univariate • Multivariate-Univariate comparison • Can view all chromosomes at once or one at a time

  3. Univariate Plots • Unlimited number of traits • Easy to customise • colours, line style, grid and reference lines

  4. Multivariate Plots • Compare univariate and multivariate results • Display path coefficients in ‘pop up’ windows

  5. Input format • Tab delimited • Univariate Plot Chromosome, Map distance, Marker name, LOD scores/Chi-squares • Multivariate Plot Chromosome, Map distance, Marker name, Univariate LOD score, Multivariate LOD score, Path coefficients (maximum of 10)

  6. To plot • Go to: File/open file • Select file • Specify Univariate or Multivariate • Customise using the Edit menu • Change axis tiles/ colours/ font size • Change line style/ width/ colour • Results can be printed or saved as jpg

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