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SpHPP Bioinformatics. 3 rd CHr-16 Workshop. Miraflores de la Sierra December, 10 th -11 th 2012 Alberto Medina. Summary. Logistics Activities and meetings Data Analysis pipeline Shotgun MRM Sharing data Viewing data Conclusions. Summary. Logistics Activities and meetings
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SpHPP Bioinformatics.3rd CHr-16 Workshop. Miraflores de la Sierra December, 10th-11th 2012 Alberto Medina
Summary • Logistics • Activities and meetings • Data Analysis pipeline • Shotgun • MRM • Sharing data • Viewing data • Conclusions
Summary • Logistics • Activities and meetings • Data Analysis pipeline • Shotgun • MRM • Sharing data • Viewing data • Conclusions
Logistics • Logistics: • FTP. Public FTP for exchanging “regular” files. A new system should be developed for high throughput instruments. • Mailing list. Different lists grouping by working groups • Wiki space: http://community.uv.es/mediawiki/ • Web site: http://hpp-sp.com • Google code site: https://code.google.com/p/s-chpp/ Webex teleconference
Summary • Logistics • Activities and meetings • Data Analysis pipeline • Shotgun • MRM • Sharing data • Viewing data • Conclusions
Activities and metings 9/3rd: Follow-up teleconference. 9/19th: Follow-up teleconference. 10/3rd: Follow-up teleconference. 10/17th: Follow-up teleconference. 10/31st: Follow-up teleconference. 11/21st: Follow-up teleconference.
Summary • Logistics • Activities and meetings • Data Analysis pipeline • Shotgun • MRM • Sharing data • Viewing data • Conclusions
Summary • Logistics • Activities and meetings • Data Analysis pipeline • Shotgun • MRM • Sharing data • Viewing data • Conclusions
Mainimprovements • Somebugshavebeenfixed • Data Analysiscouldbedirectly done byend-users • Sequest has beenincluded. • ProteinInference – ProteinGrouping.
Mainimprovements • Somebugshavebeenfixed • Data Analysiscouldbedirectly done byend-users • Sequest has beenincluded. • ProteinInference – ProteinGrouping. • Mascot Server • Curatedexperiments
Summary • Logistics • Activities and meetings • Data Analysis pipeline • Shotgun • MRM • Sharing data • Viewing data • Conclusions
Summary • Logistics • Activities and meetings • Data Analysis pipeline • Shotgun • MRM • Sharing data • Viewing data • Conclusions
Summary • Logistics • Activities and meetings • Data Analysis pipeline • Shotgun • MRM • Sharing data • Viewing data • Conclusions
Summary • Logistics • Activities and meetings • Data Analysis pipeline • Shotgun • MRM • Sharing data • Viewing data • Conclusions
Conclusions • Website should be filled. WG description ASAP. • Continuous activities and meetings. • Data Analysis. • Shotgun analysis is great! • MRM DB • Data submission pipeline. Sequest is “active”. • Interaction with C-HPP and other chromosomes (TPB).
Acknowledges • CIMA: • Victor Segura • Fernando Corrales • UCM: • Vital Vialas • IIBB/CSIC: • Óscar Gallardo • Ibermática • Aitor Moreno • UPV: • GorkaPrieto • Kerman Aloria. • Jesús M. Arizmendi. • UV: • Manuel S. Pino • JaviÓrtiz • CNB/CSIC: • Salvador Martínez de Bartolomé. • Juan Pablo Albar
Discussion • Submission pipeline. • Protein Inference. Resubmit the data. • Sequence BDs. • MRM queries. • Logo and name.