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e-Science on VNGrid Project

e-Science on VNGrid Project. Tran Van Lang, Do Van Long Members of VNGrid Project HCM City Institute of Information Technology (IOIT-HCM, VAST). Contents. VNGrid Introduction IOIT-HCM Grid E-Science Activities Plan for Future e-Science in VNGrid Conclusion. VNGrid Introduction.

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e-Science on VNGrid Project

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  1. e-Science on VNGridProject Tran Van Lang, Do Van Long Members of VNGrid Project HCM City Institute of Information Technology (IOIT-HCM, VAST) 24th APAN Meeting, Xian, China - August 2007

  2. Contents • VNGrid Introduction • IOIT-HCM Grid • E-Science Activities • Plan for Future e-Science in VNGrid • Conclusion

  3. VNGrid Introduction • IOIT-HCM Introduction • History of Grid in Vietnam • Organizations in VNGrid • Goal of VNGrid project • IOIT-HCM Grid Activities

  4. IOIT-HCM Introduction Ho Chi Minh City Institute of Information Technology (IOIT-HCM) VIETNAMESE ACADEMY OF SCIENCE AND TECHNOLOGY (VAST)

  5. 2001-2002 2003 2004 2005 IOIT-HCM Grid Project BioGrid, IOIT-HCM The Centers and systems for HPC were founded Grid Group of HCM City College Natural Sciences Conference on HPC and Grid Computing, in HCM City, held by Ministry of Science and Technology BK Grid Group, Hanoi UT HCM City UT Grid Project History of Grid in Vietnam 2006-2007 IOIT-HCM connect to Pragma VNGrid Project

  6. Organizations in VNGrid Five Universities and Institutes were collected to lead and execute VNGridproject: • Vietnamese Institute of Information Technology (IOIT, VAST) • Hanoi University of Technology (HUT) • Vietnamese National University in Hanoi (VNU – Hanoi) • Vietnamese Military Technical Academy (VMTA) • HCM City Institute of Information Technology(IOIT-HCM, VAST)

  7. Goals of VNGrid project • Establishing the Grid infrastructure in Vietnam: • Be connected by five institutions • Connecting to other Grid systems • Studying to deploy the middleware: gLite, Globus,… • Building the Grid-based, e-Science Applications: Bioinformatics, Meteorology, Virtual Reality, Cryptography,… • Other scientific applications on Grid system will be encouraged to build and apply to VNGrid • Create the environment for the collaborating and sharing resources for Science and Education • Make Grid more easy to use.

  8. IOIT-HCM Grid Activities

  9. PHÂN VIỆN CÔNG NGHỆ THÔNG TIN TẠI TP. HỒ CHÍ MINH (IOIT-HCM)

  10. PHÂN VIỆN CÔNG NGHỆ THÔNG TIN TẠI TP. HỒ CHÍ MINH (IOIT-HCM)

  11. PHÂN VIỆN CÔNG NGHỆ THÔNG TIN TẠI TP. HỒ CHÍ MINH (IOIT-HCM)

  12. PHÂN VIỆN CÔNG NGHỆ THÔNG TIN TẠI TP. HỒ CHÍ MINH (IOIT-HCM)

  13. Applications and Middleware in Pragmatestbedhttp://goc.pragma-grid.net/applications/default.html • Real science applications pair and drive middleware development • Achieve long-run and scientific results • Open to applications of all scientific disciplines • Climate simulation • Savannah/Nimrod (MU, Australia) • MM5/Mpich-Gx (CICESE, Mexico; KISTI, Korea) • Quantum-mechanics, quantum-chemistry: • TDDFT, QM-MD, FMO/Ninf-G (AIST, Japan) • Genomics • iGAP/Gfarm/CSF (UCSD, USA; AIST, Japan; JLU, China) • HPM: genomics (IOIT-HCM, Vietnam) • mpiBlast/Mpich-G2 (ASGC, Taiwan) • Organic chemistry • Gamess-APBS/Nimrod (UZurich, Switzerland) • Molecular simulation • Siesta/Nimrod (UZurich, Switzerland; MU, Australia) • Amber/Rsh ( USM, Malaysia) • Computer Science • Load Balancer (IOIT-HCM, Vietnam) • GriddLeS (MU, Australia) 2 applications from Vietnam

  14. IOIT-HCM Grid • Grid members • Infrastructure of IOIT-HCM Grid system • Network architecture of Grid System connect to KISTI, PRAGMA and VAST • Grid Portal

  15. IOIT-HCM Grid Members

  16. Infrastructure of IOIT-HCM Grid System PHÂN VIỆN CÔNG NGHỆ THÔNG TIN TẠI TP. HỒ CHÍ MINH (IOIT-HCM)

  17. Network architecture of Grid System connect to KISTI, PRAGMA and VAST PHÂN VIỆN CÔNG NGHỆ THÔNG TIN TẠI TP. HỒ CHÍ MINH (IOIT-HCM)

  18. IOIT-HCM Grid Portal • Our Grid Portal based on opensource packages: • Globus Toolkit 4 • Java CoG • Jetspeed Portal • Tomcat • Jboss • Postgresql • Condor G • GridPort4 • GridSphere Framework with JSR168-compatible Portlet Container

  19. E-Science Activities in IOIT-HCM • Grid and BioScience – BioGrid Portal • AccessGrid deployment • Telemedicine

  20. Grid and BioScience • Gird Portal • Account and Authentication • GPIR - Grid Portals Information Repository • File Management • Job Submission • Job Sequence • GRAM Job • Condor Job Submission • Building Bioinformatics tools with Grid Technology apply on Grid Portal: • Phylogenetic Tree • Blast • Motif finding • Protein Structure Prediction • …

  21. Grid Portal

  22. Gird computing apply for generating the Phylogenetic Tree

  23. IOIT-HCM Grid Portal - Blast deploying

  24. Motif finding • Programming in MPI-2 apply on IOIT-HCM Grid System

  25. Protein Structure prediction • Programming in MPI-2 with Molecular Dynamic (MD) Algorithm

  26. Access Grid deployment • Access Grid for collaboration the multimedia data (IOIT-HCM): Support ting to the Conference on IT and Communication in Haiphong, Vietnam (10/2005)

  27. Meeting Room 3 2nd Floor – Block 2 Meeting Room 1 2nd Floor – Block 1 Center Room 1st Floor – Block 1 Meeting Room 2 1st Floor – Block 2

  28. Telemedicine

  29. Telemedicine Conference on 05/05/05 Hospital of Medical (HCM) vs. VietDuc Hospital (Ha Noi)

  30. Conference between BenTre Province Leaders with University of Medical (HCM)Deploying Telemedicine with AccessGrid Technology from IOIT-HCM

  31. Telemedicine between Nhi Dong 1 Hospital (HCM) with Nguyen DinhChieu (Ben Tre Province)Deploying Telemedicine with Video Conferencing Technology from IOIT-HCM

  32. Future E-Science deployment and Other Grid applies on VNGrid • Applying the HPC and Grid Computing for climate forecast (Hanoi UT and Center for HPC, Hanoi UNS) • Using MM5 model • Simulating some biomedical problems (Hanoi College of Technology)

  33. Setup the e-Learning system for training on Gird

  34. Eleanring system of IOIT-HCM deploy in Bamako, Mali, Afica

  35. Research for deploy System in South Provinces of Vietnam Connecting from HCM to Can Tho Provinces

  36. Connecting from HCM to An Giang Province

  37. BirdFlu Observer

  38. Vietnam Digital Map deploying

  39. Join to the Grid Communities

  40. EGEE User Forum AsiaGrid - Singapore

  41. Join to the Grid Communities (cont.) • GeoGrid, Pragma 12: Thailand (03/2007) • ISGC 07: Taipei (03/2007) • EGEE User Forum: Manchester (05/2007) • AsiaGrid: Singapore (06/2007) • APAN Meeting: China (08/2007) • EGEE Meeting: Pudapest (10/2007) • Do Son School: Vietnam (11/2007) • …

  42. Future step: Setup Grid on VinaRenNetwork

  43. Conclusion • We are studying Grid Technology and try to apply to Science and Education. • Will invest more for the networking and infrastructure • Need to connect to the other Grid System for expand the collaboration. • Our next step is connecting to EGEE Asia Federation (EAF) to receive the operations technology and experience for deploying e-Science on our Grid Resource Centers.

  44. Thank for your Attention

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