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Functional genomics data collection, integration, visualization project

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Functional genomics data collection, integration, visualization project. Collects functional genomics (microarray, interaction, localization, etc) data Integrates the data

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Functional genomics data collection, integration, visualization project

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  1. Functional genomics data collection, integration, visualization project • Collects functional genomics (microarray, interaction, localization, etc) data • Integrates the data • Provides access to the original data collected and the integrated data via user friendly web tools and convenient bulk download

  2. A data integration and network discovery system Olga Troyanskaya’s lab: Chad Meyers, Adam Wible, Drew Robson

  3. Demohttp://function.princeton.edu/magic/

  4. System components

  5. Building the system around the GMOD database package • Write code to load functional genomics data and associated info • Have curator tool (perl CGI, makes use of MAGE-stk and chado modules) that loads experimental design information (but not actual data yet) • Design a new schema module to store new types of data • Have working draft • Design and implement software for our specific web tools • Have php version working off the database

  6. Next steps • Load actual genomics data, via command line and curator tool • Clean up draft schema module, better integrate it with rest of database, send it around to gmod-schema • Go over code for web interface

  7. SGD @ Princeton: Reazur Rahman Rose Oughtred Fan Kang John Wiggins Mark Schroeder Kara Dolinski David Botstein Troyanskaya lab: Adam Wible Drew Robson Chad Meyers Olga Troyanskaya

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