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1st EELA Grid School

EMBOSS over a Grid. Eduardo MURRIETA LEON Romualdo ZAYAS LAGUNAS Pierre-Alain BRANGER Jérôme VERLEYEN Roberto RODRIGUEZ César BONAVIDES Alfredo HERNANDEZ. 1st EELA Grid School. December 6th of 2006. Installation. Uncompress EMBOSS-latest.tar.gz configure, make, make install

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1st EELA Grid School

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  1. EMBOSS over a Grid Eduardo MURRIETA LEON Romualdo ZAYAS LAGUNAS Pierre-Alain BRANGER Jérôme VERLEYEN Roberto RODRIGUEZ César BONAVIDES Alfredo HERNANDEZ 1st EELA Grid School December 6th of 2006

  2. Installation • Uncompress EMBOSS-latest.tar.gz • configure, make, make install • Installation of embassy (non EMBOSS tools) • Setting up DB (4.4GB/3.5hs/20%) • Tests, OK!

  3. Plan A JDL File Type = "Job"; JobType = "Normal"; Executable = “seqret"; Arguments = "-outseq“,”salida.fasta”; StdError = “stderr.err"; InputSandbox = { “seqret”, “*fasta”, “*idx”, … }; OutputSandbox = {“salida.fasta“, “stderr.err”}; UI CE WNs BDII RB

  4. Plan B JDL File Type = "Job"; JobType = "Normal"; Tag = “EMBOSS-4.0.0”; Executable = “seqret"; Arguments = "-outseq“,”salida.fasta”; StdError = “stderr.err"; OutputSandbox = {“salida.fasta“, “stderr.err”}; UI CE WNs BDII RB

  5. Plan C UI CE WNs GFAL BDII RB SE

  6. ! Muito Obrigado Respostas

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