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Access to Biological Collection Data: Comprehensive ABCD Data Schema Overview

This document outlines the ABCD (Access to Biological Collection Data) data schema designed for all types of primary biodiversity data, including living, preserved, and observational forms across various biological categories such as botanical, zoological, bacterial, and viral across marine and terrestrial ecosystems. It details the structure for complex hierarchical data, approximately 1,055 data elements, facilitating integration with BioCASe Provider Software and GBIF. The XML-based schema enables flexibility for additional information and highlights essential aspects such as specimen information, DNA elements, and data transformation processes using Pentaho.

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Access to Biological Collection Data: Comprehensive ABCD Data Schema Overview

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  1. Access to Biological Collection Data: Data schema for all types of primary biodiversity data (living/preserved/observational, botanical/zoological/bacterial/viral, marine/terrestrial) Used with BioCASe Provider Software (ca. 30 Mio. records provided to GBIF) XML (eXtensible Markup Language) based can be consumed by humans and machines Highly complex, hierarchical, currently 1,055 data elements almost every data item will fit in Extendable (plug-in slot for additional information) standard (currently version 2.06) ABCD Data Schema

  2. Namespace: http://www.tdwg.org/schemas/abcd/2.06 ABCD: Structure

  3. ABCD Metadata

  4. ABCD: Triple ID, Record Basis

  5. ABCD: Identification (multiple)

  6. ABCD: Gathering Event

  7. ABCD: Multimedia

  8. ABCD: Unit Associations

  9. ABCDDNA • - DNA part contains ca. 75 elements • - Unit = DNA sample • - Specimen/voucher as Associated Unit • - Already integrated in BPS 3 • - Mapping example at www.dnabank-network.org • - Namespace = • http://www.dnabank-network.org/schemas/ABCDDNA • Mapping of main specimen information together with DNA extension required for indexing • http://wiki.bgbm.org/dnabankwiki/index.php/Mapping_example

  10. DarwinCore Archives in BioCASe ABCD Web Service (ABCD 2.06, ABCDDNA) based Networks 1. Dumping: BioCASe Provider Software ABCD Archive 2. Transforming: Pentaho Data Transformation DarwinCore Archive(s) BioCASe Provider Software 3

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