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SGN User-Friendly Homepage Redesign for Easy Access to Breeders Toolbox and Trait Search Functions

The revamped SGN homepage now offers quick access to major tools and datasets, with the Breeders Toolbox featuring direct links to important tools. The 'trait search' page allows users to search for traits associated with QTLs and browse through the list of traits by typing in the trait name or filtering through available QTL populations. The new QTL analysis tool, solQTL, enables users to upload data and analyze QTLs online. Private access ensures data security. Additionally, 101 potato accessions from SolCAP with photos and phenotype measurements have been loaded, organized with a controlled vocabulary format for Traits and Phenotype Ontology. More traits will continue to be added from SolCAP experiments, using breeder-specific terms mapped to the ontology for easy querying with synonymous terms.

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SGN User-Friendly Homepage Redesign for Easy Access to Breeders Toolbox and Trait Search Functions

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  1. SGN new user-friendly homepage design. Easy access to the major tools and datasets

  2. Breeders Toolbox page redesigned with quick links to the major SGN Breeders tools

  3. SGN 'trait search' page. Search traits associated with QTLs Browse the list of traits Type the trait name Browse by available QTL population

  4. SGN help page for 'Trait Search'

  5. SGN help page for 'Trait Search'

  6. SGN help page for 'Trait Search'

  7. SGN help page for 'Trait Search'

  8. SGN help page for 'Trait Search'

  9. SGN help page for 'Trait Search'

  10. SGN help page for 'Trait Search'

  11. QTL analysis A QTL tool, solQTL, has been implemented, allowing users to upload data and analyze QTLs on-line (http://solgenomics.net/phenome/qtl_form.pl

  12. QTL analysis Private means only the person who loaded the data has access.

  13. Phenotypes 101 potato accessions from SolCAP were loaded, with photos and phenotype measurements

  14. Phenotypes 101 potato accessions from SolCAP were loaded, with photos and phenotype measurements

  15. Phenotypes 101 potato accessions from SolCAP were loaded, with photos and phenotype measurements

  16. Phenotypes 101 potato accessions from SolCAP were loaded, with photos and phenotype measurements

  17. Phenotype Ontology and traits Traits are were added in a controlled vocabulary format (ontology) whenever required for adding potato phenptyped trait

  18. Phenotype Ontology and traits Traits are were added in a controlled vocabulary format (ontology) whenever required for adding potato phenptyped trait * More traits will be added as SGN continues to load SolCAP phenotyping experiments. Breeder-specific terms will be used as the trait name, and different descriptors will be mapped to the ontology using synonyms, allowing to query the database with any similar terms from different descriptor systems (e.g. 'shoot maturity' and 'vine maturity').

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