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Genome Browsing

Genome Browsing. with the Ensembl Genome Browser. http://www.ensembl.org/. Genome Browsers. UCSC. NCBI. Ensembl. http://genome.ucsc.edu/. http://www.ensembl.org/. Ensembl Genome Browser. Human Genome. MapView. ContigView - Overview. CytoView. ContigView - Detailed view. GeneView.

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Genome Browsing

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  1. Genome Browsing with the Ensembl Genome Browser http://www.ensembl.org/

  2. Genome Browsers UCSC NCBI Ensembl http://genome.ucsc.edu/ http://www.ensembl.org/

  3. Ensembl Genome Browser

  4. Human Genome

  5. MapView

  6. ContigView - Overview

  7. CytoView

  8. ContigView - Detailed view

  9. GeneView

  10. GeneSpliceView

  11. GeneSNPView

  12. GeneView → TransView/ProtView

  13. TransView

  14. TransView (continued)

  15. ProtView

  16. ProtView - Sequence

  17. ProtView → DomainView/FamilyView

  18. DomainView

  19. FamilyView

  20. ContigView → FeatureView

  21. FeatureView

  22. MapView → SyntenyView

  23. SyntenyView

  24. ContigView → MultiContigView

  25. MultiContigView - Overview

  26. MultiContigView – Detailed view

  27. Other Ensembl Features • Blast searching • Data mining (Biomart) • Select data based on advanced criteria (e.g. genome location, protein domains, functional annotation, expression, orthology, etc.) • Retrieve in various formats (HTML, Excel, text) • Data downloading (FTP)

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