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Solexa tag analysis

This study presents comparative analysis of gene expression levels, creating clusters based on tag counts, identifying core promoter motifs, and analyzing gene relationships. Explore gene annotations and promoter elements.

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Solexa tag analysis

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  1. Solexa tag analysis 0620 ahsan

  2. 今日の結果 • 発現量の比較結果 • Upload 済み • 遺伝子の名前でkeyword 検索できる • Distance20かつtag40以上cluster を作りました。 • Cluster の代表TSS決まる corepromoter 領域のmotif 解析 • Core promoter motif の　module の存在 • Annotation TSS から代表TSS の距離 • Annotation TSS からcluster開始点の距離

  3. Tag to Gene Relation

  4. FlybaseTrID GeneName • FBtr0083733 sqz-RA • FBtr0084012 ppan-RA • FBtr0078728 Xe7-RA • FBtr0078729 Xe7-RB • FBtr0081642 Aly-RA • FBtr0076616 Gug-RA Keyword 検索 Keyword:　遺伝子名前を記入する Keykinds:geneName を選択する URL: http://dev.utgenome.org/~utgb/drosophila/genome_browser/browser.php

  5. DRE TATA Inr DPE MTE Initiator Downstream Promoter Element TATA Box Motif Ten Element Core promoter Structure DNA Replication Element Binding Factor Image1 : Core promoter. Transcription Start Site (TSS) position is 0, where TATA at -30 to -25 , DPE at +29 to +33, MTE at downstream. DRE position is not restricted by upstream of TSS.

  6. motif element in Drosophila Chromosome and RepTSS core promoter

  7. TATA motif position in ResTSS core promoter

  8. B INR motif position in ResTSS core promoter

  9. C DPE motif position in ResTSS core promoter

  10. MTE motif position in ResTSS core promoter D

  11. co-existence of binding motif in core promoter region Here 0,1 express, the present and absent of each motif elements in written order

  12. TSS distance Annotation TSS から代表TSSの距離 Annotation TSS からClusterの開始点の距離

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