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Redox Couple Configuration Tool for Microbial Reactions

Decouple redox pairs to manage electron donation and acceptance in half reactions. Set initial composition, pH, and kinetics for optimal microbial reactions. Define constraints and parameters for efficient biomass growth.

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Redox Couple Configuration Tool for Microbial Reactions

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  1. Config → Redox Couples... Decouple redox pairs for electron donating and accepting half reactions.

  2. e− donor e− acceptor Enter initial fluid composition including electron donating and accepting species.

  3. “add” → Fixed → pH “add” → Kinetic → Microbial reaction Go to the Reactants pane to fix pH and enable microbial kinetics.

  4. Enter microbial redox reaction. Enter thermodynamic constraints and kinetic parameters, including: • rate constant • half-saturation constants • initial biomass • growth yield and decay constant • promoting and inhibiting species • ATP threshold energy

  5. Rate is initially biomass limited, but increases until thermodynamic and kinetic limitations develop.

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