Analysis of FGFR2 and Related Gene Junctions Through RTPCR Chromatography
This report details a comprehensive analysis of various gene junctions involving FGFR2, PLA2G2A, FOXJ3, USP7, and TACC2 using RTPCR chromatograms. It explores chromosomal locations on chromosomes 1, 10, 16, and 17, highlighting specific exons and their relationships in junction formation. The findings include insights into frame shifts and the generation of truncated protein forms, providing valuable information for understanding genetic alterations and potential implications in disease mechanisms.
Analysis of FGFR2 and Related Gene Junctions Through RTPCR Chromatography
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Presentation Transcript
FGFR2 PLA2G2A CGI junction site: Chr1: 20304620xchr10:123317039 RELATEDJUNCTIONIDS : 4381 Exon 3 Exon 4 Exon 6 RTPCR Chromatogram C0996NC0996T FGFR2 PLA2G2A …SENSNNKTKQDSCR…
ATE1 FGFR2 CGI junction site: Chr10:123296959xChr10:123529065 RELATEDJUNCTIONIDS : 3358 Exon 10 Exon 11 Exon 7 RTPCR Chromatogram C0996NC0996T ATE1 FGFR2 …NQDPEAERSPHR…
FOXJ3 SULT2B1 CGI junction site: Chr1: 427619259xchr19:49041594 RELATEDJUNCTIONIDS : 4294 Exon 1 Exon 2 Exon 2 RTPCR Chromatogram C0996NC0996T FOXJ3 SULT2B1 ...ACPSVTSLSQKLPGEY…
USP7 CARHSP CGI junction site: chr16: 8951142xchr16:9017874 RELATEDJUNCTIONIDS: 2781 Exon 1 Exon 2 Exon 4 RTPCR Chromatogram C0996NC0996T USP7 CARHSP ...EEDMEDVWKGSM… Frame shift, add new 131 AAs after USP7
TACC2 short form NSMCE4A CGI junction site: No found Exon 1 Exon 2 Exon 3 TACC2 short form NSMCE4A RTPCR Chromatogram C0996NC0996T Form C-terminal truncated NSMCE4A
RPL38 BX957212 CGI junction site: Chr17:72204231xchr17:72588829 RELATEDJUNCTIONIDS: 1151 Exon 1 Exon 4 Exon 5 BX957212 overlaps with C17orf77 RTPCR Chromatogram C0996NC0996T BX957212 RPL38 Out-frame