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R is a powerful open-source programming language widely used in the statistical research community. Developed from Bell Labs' S language, R facilitates rapid development of methods for various data types and supports extensive graphics capabilities. With nearly 2,400 contributed packages applicable across numerous scientific and business fields, R provides users with unparalleled flexibility and control. The active user community, international conferences, and comprehensive documentation ensure robust support and continuous development. Explore the possibilities with R and enhance your data analysis skills today.
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R freeware statistics package Tara Jenson NCAR RAL JNT Tom Hopson
WhatisR? •Astatisticalprogramminglanguage •Inpart,developedfromtheSProgramming LanguagefromBellLabs(JohnChambers) •Createdtoallowrapiddevelopmentof methodsforuseindifferenttypesofdata. •Createnewgraphics.Manydefault parametersarechosen,butusersretain completecontrol.
WhyR? •Rhasbecomethedominantlanguageinthestatistical researchcommunity. •RisOpenSourceandfree. •Runsonalloperatingsystems •Nearly2,400packagescontributed. •Packagesandapplications innearlyeveryfieldof science,businessandeconomics. •SeeRNotes,RJournalandJournalofStatistical Software www.jstatsoft.org •Morethan100bookswithaccompanyingcode •Verylarge,activeuserbase.
WhynotR? •NCL,IDL,Matlab,SAS,…areallviable alternativestoR.Ifyouareapartofanactive communityofresearchersusinganother language,dolikewise. •Ifwewerebiostatisticianswewouldbeusing SAS.BookTitle:“AnalyzingReceiverOperatingCharacteristicCurveswithSAS” •Considerbuildingverificationfunctionsand utilitiesaspartofcodedevelopment. Verificationneednotbeanexternalprocessto forecasting.
TheRCommunity •Developers –RCoreGroup(17members),only2haveleftsince 1997 –MajorupdateinApril/October(freezedates,beta versions,bugtracking,...) •Mailinglists –Helplist~150messages/day,archived, searchable. •5InternationalConferences,2US,1China
EverythingaboutRisatwww.r-project.org •Sourcecode •Binarycompilations(Windows,MacOS,Linux •Documentation(Maindocuments,plusnumerous contributed.Someinforeignlanguages.) •Newsletter(replacedbyRJournal.) •Mailinglist(Severalsearchengines) •Packagesoneverytopicimaginable •Wikiwithexamples •ReferencelistofbooksusingR.(morethan100) •TaskManager
UseRwithscripts •InLinux-EmacsSpeaksStatistics –Provides syntax-based –Objectnamecompletion –Keystrokeshortcuts –Commandhistory –Alt-xRtoinvokeRwithXemacs. •InWindows,useeditor –AddedGUIfeatures –<control>RsendsalineorhighlightedsectionintoR. –InstallpackagewithGUIs –Savegraphicsbypointandclick. •MacOS –SimilartoWindowswithadvantages ofsystemcalls.
PackagesinR •Contributedbypeopleworldwide. •Allowscientistsorstatisticianstopushtheir ideas. •ApplyandextendRcapabilitiestomeetthe needsofspecificcommunities. •Accompanymanystatisticaltextbooks
Asampleofusefulpackages • • • • • •Rgis,spatstat(GIS) •ncdf(supportfor netcdffiles) •Rcolorbrewer •randomForests verification fields(spatialstats) radiosondes extRemes BMA(BayesianModel Averaging) •BMAensemble •circular •Rsqlite
Packages •Packagesmustbeinstalled tocall. •Packagesmustbecalledtouse. •Basepackagesareinstalledbydefault.
10mostusefulfunctioninR •aggregate-appliesafunctiontogroupsof datasubsetbycategories. •apply-incrediblyefficientinavoidingloops. Appliesfunctionsacrossdimensionsofarrays. •layout-creativelydivideaprintregion. •xyplot(inthelatticepackage)slightlyadvance graphictechniques •%in%returnslogicalshowingwhichelements inAareinB.(e.gA%in%B)
Moretop10 • • • • • table–createcontingencytabelcounts. boot–applybootstrapfunctioncorrectly read.fwf–readfixedwidthformatdata par–controleverythinginagraph system()–allowsyoutocallsystem commandfromR •pairs–themostunderutilizedplot–plotsa matrixof4columnsina4x4plotlayout
Login, start your windowing system. $ R Start R as appropriate for your platform. The R program begins, with a banner. (Within R, the prompt on the left hand side will not be shown to avoid confusion.) help.start() Start the HTML interface to on-line help (using a web browser available at your machine). You should briefly explore the features of this facility with the mouse. In particular, work through 1.5, 2.1 – 2.3, and appendix A (just the first one or two sections)
RExercises • • • • • Choosegroupsof3-4–findacomputer Logontomachines Bringupatleast2xterms >cd/home/user/Desktop/longlead >viintro2R.2013.R And work through the commands given …