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Got Tissue? How Arizona Created a Statewide Virtual Tissue Bank

Got Tissue? How Arizona Created a Statewide Virtual Tissue Bank. Jim Matthews Arizona Biomedical Research Commission Jungdae Kokotov 5AM Solutions. July 27, 2010 www.5amsolutions.com. Webinar Technical Details.

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Got Tissue? How Arizona Created a Statewide Virtual Tissue Bank

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  1. Got Tissue?How Arizona Created a Statewide Virtual Tissue Bank Jim Matthews Arizona Biomedical Research Commission Jungdae Kokotov 5AM Solutions July 27, 2010 www.5amsolutions.com

  2. Webinar Technical Details During discussion time, “raise hand” to speak Type questions in advance; click send Questions + answers appear in chat window

  3. The Issue of Tissue • Biospecimens are at the core of discovery-oriented scientific research. • Issues: • Collecting • Annotating • Finding • Obtaining

  4. About ABRC

  5. What Led Us Here

  6. Our Process The Solicitation

  7. Our Vision Sun Health Research Institute

  8. Arizona Biospecimen Consortium A Consortium of Institutional Partners

  9. Our Challenges • Partnership buy-in • Synchronicity of technology + governance

  10. From Vision to Working System • Agile processes • Engaged stakeholders • 5AM participation in Consortium meetings

  11. Biolocator: High Level Workflow

  12. How We Integrate – and Share – the Data ABL Automatic data pull Periodic data import Commercial BioBanking Solution Custom Application CBM – NCI’s caGrid

  13. Share Information Over NCI’s caGrid http://portal.training.cagrid.org/web/guest/home

  14. Our Technical Challenges • Mapping data • Fields • Diverse systems, diverse data fields • How do we find a common model…? • NCI’s Common Biorepository Model • Values • Diverse systems, diverse data values • How do we find a common disease vocabulary…? • SNOMED-CT Collection Date Quality Rating Specimen Type Tumor Rating Disease Type Liquid Nitrogen Paraffin Block Date Time Tissue Type Cancer Boolean Lab Report Freetext Malignant Tumor of Breast Breast Cancer 254837009 Breast Cancer Type 1 Susceptibility Protein Breast Carcinoma

  15. https://demo.5amsolutions.com/tissuelocator-web/

  16. ABRC’s Future Role in the Arizona Biomedical Consortium • Funding the ABL program • Demonstrating usefulness • Assisting institutional partners • Equipment • Personnel • Integration Support

  17. Next Steps for the Arizona Biospecimen Consortium • Develop a Platform for Future Services • Cord blood bank • Cord blood patient registry • Trauma center data warehouse linkage • Expand our Partners + Participants • Phoenix Indian Medical Center • Phoenix VA • Others

  18. Contact Us James MatthewsDeputy Director Arizona Biomedical Resource Commission james.matthews@azabrc.gov Jungdae KokotovProject ManagerBiolocator 5AM Solutions jkokotov@5amsolutions.com Arizona Biospecimen Locator Demo: https://demo.5amsolutions.com/tissuelocator-web/

  19. ??? • What else would you like to discuss – open discussion of your questions, topics, concerns

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