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Translational Informatics (IDTC 289)

Translational Informatics (IDTC 289). Who we are. What we do. Help finding new cures for old diseases using large scale data mining, machine learning, modeling, and simulation. Who we work with (on weekly basis). Industrial collaboration. $300K/year since 2005 2 clusters + other servers.

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Translational Informatics (IDTC 289)

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  1. Translational Informatics (IDTC 289)

  2. Who we are

  3. What we do • Help finding new cures for old diseases using large scale data mining, machine learning, modeling, and simulation

  4. Who we work with (on weekly basis)

  5. Industrial collaboration • $300K/year since 2005 • 2 clusters + other servers

  6. What we need • Big iron • Chilaca ($70K, 2006) – 16 nodes, 2 CPUs+2GB RAM/node (IDTC – retired) • Synergy ($60K, 2010) – 18 nodes, 8 cores+24GB RAM/node (CARC – production) • Pinon ($99K, 2012) – 33 nodes, 24 cores+64GB RAM/node (IDTC – production) • Access to other CARC clusters • Good workstations • Most people have both Win and Linux workstations • I use daily • 32 GB Win7 desktop ($3K) • 16 GB Linux desktop ($1.8K +$2.6K 3D graphic card) • High speed network connections!!! • Across building • Across campus • Across the world

  7. High speed network – across building $ time scpcbologa@pinon.health.unm.edu:cnav.oeb.gz . cbologa@pinon.health.unm.edu's password: cnav.oeb.gz 100% 14GB 55.8MB/s 04:26 real 4m30.818s user 3m1.771s sys 0m57.960s $ time scp cnav.oeb.gz cbologa@pinon.health.unm.edu: cbologa@pinon.health.unm.edu's password: cnav.oeb.gz 0% 12MB 0.0KB/s - stalled -^C real 9m51.847s user 0m0.276s sys 0m0.036s

  8. High speed network – across campus [cbologa@pinon ~]$ time scpcbologa@tudor.alliance.unm.edu:work/cnav/cnav.oeb.gz . cbologa@tudor.alliance.unm.edu's password: cnav.oeb.gz 100% 14GB 8.5MB/s 29:06 real 29m14.343s user 3m13.421s sys 2m1.670s [cbologa@pinon ~]$ time scp cnav.oeb.gz cbologa@tudor.alliance.unm.edu: cbologa@tudor.alliance.unm.edu's password: cnav.oeb.gz 1% 250MB 0.0KB/s - stalled -^C Killed by signal 2. real 9m28.622s user 0m2.310s sys 0m0.837s

  9. Research Network • We really need it • We do not want to slow down Netflix and YouTube users with our big files • THANK YOU

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