'Alignment score' diaporamas de présentation

Post-processing long pairwise alignments

Post-processing long pairwise alignments. ??? 93/4/28. Zheng Zhang et al., Bioinformatics Vol.15 no. 12 1999. Outline. Motivation Theoretical basis of the proposed algorithms How to build up Useful Tree An application. Motivation. Avoid local alignment problems

907 views • 54 slides

Post-processing long pairwise alignments

Post-processing long pairwise alignments. ??? 93/4/28. Zheng Zhang et al., Bioinformatics Vol.15 no. 12 1999. Outline. Motivation Theoretical basis of the proposed algorithms How to build up Useful Tree An application. Motivation. Avoid local alignment problems

649 views • 54 slides

613 views • 50 slides

Pairwise Alignment and Database Searching

Pairwise Alignment and Database Searching. Anders Gorm Pedersen Molecular Evolution Group Center for Biological Sequence Analysis. Sequences are related. Darwin: all organisms are related through descent with modification => Sequences are related through descent with modification

636 views • 49 slides

From Pairwise Alignment to Database Similarity Search

From Pairwise Alignment to Database Similarity Search. Outline. Summary Local and Global alignments FASTA and BLAST algorithms Evaluating significance of alignments. Local. Global. Best score for aligning the full length sequences Dynamic programming Algorithm: Needelman- Wunch

584 views • 48 slides

CS 5263 Bioinformatics

CS 5263 Bioinformatics. Lecture 4: Local Sequence Alignment, More Efficient Sequence Alignment Algorithms. Roadmap. Review of last lecture Local sequence alignment More efficient sequence alignment algorithms. Given a scoring scheme, Match: m Mismatch: -s Gap: -d

613 views • 47 slides

Yutu Liu -- CPSC 689 Algorithmic Techniques for Biology Spring 2005

A memory-efficient algorithm for multiple sequence alignment with constraints Chin Lung Lu and Yen Pin Huang National Chiao Tung University Taiwan, Republic of China Bioinformatics, Vol. 21 no. 1 2005. Yutu Liu -- CPSC 689 Algorithmic Techniques for Biology Spring 2005. Motivation.

471 views • 39 slides

A Probabilistic Framework for Structure-based Alignment

A Probabilistic Framework for Structure-based Alignment. Kurohashi-lab M2 56430 Toshiaki Nakazawa. Outline. Introduction of Machine Translation What is Alignment? Statistical Machine Translation (SMT) Example-based Machine Translation (EBMT) Baseline alignment method

458 views • 33 slides

Sequence Comparison

413 views • 33 slides

Daniel E. Almonacid and Patricia C. Babbitt

Classification of Mechanistically Diverse Enzyme Superfamilies According to Similarities in Reaction Mechanism. Daniel E. Almonacid and Patricia C. Babbitt. 18 th July 2008. Overview. Introduction Motivation E.C. Classification Enzyme Catalysis Databases

464 views • 31 slides

1-month Practical Course

C. E. N. T. E. R. F. O. R. I. N. T. E. G. R. A. T. I. V. E. B. I. O. I. N. F. O. R. M. A. T. I. C. S. V. U. 1-month Practical Course Genome Analysis (Integrative Bioinformatics & Genomics) Lecture 3: Pair-wise alignment

512 views • 31 slides

Sequence Local Alignment using Directed Acyclic Word Graph

394 views • 30 slides

Dynamic Programming

Dynamic Programming. Prof. Navneet Goyal Department of Computer Science & Information Systems BITS, Pilani. Sequence Comparison. code full name A alanine C cysteine D aspartate E glutamate F phenylalanine G glycine H histidine

422 views • 29 slides

BLAST: Basic Local Alignment Search Tool Altschul et al. J. Mol Bio. 1990.

BLAST: Basic Local Alignment Search Tool Altschul et al. J. Mol Bio. 1990. CS 466 Saurabh Sinha. Motivation. Sequence homology to a known protein suggest function of newly sequenced protein Bioinformatics task is to find homologous sequence in a database of sequences

564 views • 26 slides

Learning to recognize features of valid textual inferences

Learning to recognize features of valid textual inferences. Bill MacCartney Stanford University with Trond Grenager, Marie-Catherine de Marneffe, Daniel Cer, and Christopher D. Manning. The textual inference task. Does text T justify an inference to hypothesis H ?

435 views • 21 slides

MBoMS Genomics of Model Microbes Lab 4: Multiple sequence alignment

MBoMS Genomics of Model Microbes Lab 4: Multiple sequence alignment. Multiple Sequence Alignments. Your next task will be to create multiple sequence alignments This is one of the most challenging steps in the study of molecular evolution

281 views • 19 slides

Multiple Sequence Alignment

337 views • 18 slides

Rebecca Alford Commack High School

A Novel Approach to Modeling Genetic Sensory Impairments through De Novo Prediction of Mutant Protein Structure. Rebecca Alford Commack High School. Genetic Sensory Impairments. Group of inherited visual and hearing impairments Affects 1 in 2,000 per year

320 views • 18 slides

Presented by: Xia Li

SeqMap : mapping massive amount of oligonucleotides to the genome Hui Jiang et al. Bioinformatics (2008) 24: 2395-2396 The GNUMAP algorithm: unbiased probabilistic mapping of oligonucleotides from next-generation sequencing Nathan Clement et al. Bioinformatics (2010) 26: 38-45 .

211 views • 12 slides

Guidelines for sequence reports

Guidelines for sequence reports. Outline. Summary Results & Discussion Sequence identification Function assignment Fold assignment Identification of functional residues Methods Web tools: list which ones you used References E.g. functional characterization

259 views • 12 slides