Ancestral states - PowerPoint PPT Presentation

Correlated trait evolution

Correlated trait evolution. Maximum likelihood approach (Pagel and Milligan). Procedure. Estimate the set of rates in the q-matrix that maximize the likelihood of the data and calculate that likelihood

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Probabilistic Approaches to Phylogenies

Probabilistic Approaches to Phylogenies. BMI/CS 576 www.biostat.wisc.edu/bmi576.html Sushmita Roy sroy@biostat.wisc.edu Oct 2 nd , 2014. Readings. Chapter 8 Sections 8.1, 8.2, 8.3, 8.4. Key concepts. Scoring a tree based on likelihood of observed data

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