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Pair HMM and the Stepping Stone algorithm

Pair HMM and the Stepping Stone algorithm. Mani Right Now. Our Pair HMM state diagram. Viterbi algorithm. Time complexity O( mns 2 ), Space complexity O( mns ) m – length of genomic sequence n – length of cDNA sequence s – number of states (~13 now)

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Pair HMM and the Stepping Stone algorithm